PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g035350.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 310aa MW: 35253.3 Da PI: 9.333

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g035350.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.6e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ Csa17g035350.1 63 WVCERCSKGYAVQSDYKAHLKTC 85 58*******************98 PP
2	zf-C2H2	11.5	0.00089	93	111	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ Csa17g035350.1 93 DCGRVFSRVESFIEHQDTC 111 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MHRRRHKVPW KLLKREKKDE EVRKRVYVCP EPTCLHNNPC HALGDLVGIK KHFRRKHSVH 60 KQWVCERCSK GYAVQSDYKA HLKTCGSRGH SCDCGRVFSR VESFIEHQDT CTIRHSPPTN 120 HRPLQQHTDA TVAPSRTTST TSFGPLLHGL PLLRPPPPPY QHSQALANYP FNALSASPFE 180 SLELQLSIGM TRTSAQAKST EKGETSLTKE RPNEEARMAE KMRQEAKRQI EMAETDFEKA 240 KRIRKEAKAE LEKAQIVREE AIKRINATMM EITCHSCKHL FQLPIMADES TSSLVMSYVS 300 SATTEGECE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-17	61	111	5	55	Zinc finger protein JACKDAW
5b3h_F	3e-17	61	111	5	55	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:24039602}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g035350.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493476	0.0	AB493476.1 Arabidopsis thaliana At1g25250 mRNA for hypothetical protein, partial cds, clone: RAAt1g25250.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010477975.1	0.0	PREDICTED: protein indeterminate-domain 16-like
Swissprot	Q9FRH4	0.0	IDD16_ARATH; Protein indeterminate-domain 16
TrEMBL	R0GPX0	0.0	R0GPX0_9BRAS; Uncharacterized protein
STRING	XP_010477975.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM693	28	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25250.1	1e-150	indeterminate(ID)-domain 16

Publications ? help Back to Top
Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]