PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g036070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 398aa    MW: 44244.3 Da    PI: 8.1709
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g036070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP124.54.6e-39176252177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cq++gC+ dls+ak+yhr+h+vCe+hs+ p+v+v+g+e rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q
  Csa17g036070.1 176 RCQIDGCDLDLSSAKDYHRKHRVCEKHSEFPKVTVRGIELRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ 252
                     6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-32169238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.539174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.05E-36175252IPR004333Transcription factor, SBP-box
PfamPF031103.4E-31177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDCNMVSSSQ WDWENLIMSN PSKSENEKKQ QSTEWEFEKG EGIESIIPDF LGFERVSSGS  60
ATSFWNTAVS KSSQSTSINS SSPEVKQCKL APQSSPGDSC SNIDFAQVKA STTALEASVA  120
SAESDLCLKL GKRTYSEEFW GRNNNDISAV SMKLLTPSVV ARKKSKSCGQ SMQVPRCQID  180
GCDLDLSSAK DYHRKHRVCE KHSEFPKVTV RGIELRFCQQ CSRFHAVSEF DEKKRSCRKR  240
LSHHNARRRK PQGLYPLNPE RVYDRRQHTS MLWNGLSLNT RSEETYAWGT TYETKPTQME  300
TGFALSFQRG NGSEEQLFAS SSRSFSVFQT SGGLSAGKPN IQLPDKGLGD CSGGLHESQD  360
FHSALSLLST SSDPRGTKHN PVVEPQPIFG TFPTHFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-241772501184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249KKRSCRKRLSHHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g036070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116370.0AJ011637.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 10.
GenBankAY1420280.0AY142028.1 Arabidopsis thaliana At1g27370/F17L21_16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478063.10.0PREDICTED: squamosa promoter-binding-like protein 10 isoform X1
RefseqXP_010478064.10.0PREDICTED: squamosa promoter-binding-like protein 10 isoform X1
RefseqXP_010478065.10.0PREDICTED: squamosa promoter-binding-like protein 10 isoform X1
RefseqXP_010478066.10.0PREDICTED: squamosa promoter-binding-like protein 10 isoform X1
RefseqXP_010478067.10.0PREDICTED: squamosa promoter-binding-like protein 10 isoform X1
SwissprotQ8S9L00.0SPL10_ARATH; Squamosa promoter-binding-like protein 10
TrEMBLR0GPP40.0R0GPP4_9BRAS; Uncharacterized protein
STRINGXP_010478068.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50041653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.40.0squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu N,Niu QW,Ng KH,Chua NH
    The role of miR156/SPLs modules in Arabidopsis lateral root development.
    Plant J., 2015. 83(4): p. 673-85
    [PMID:26096676]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]
  4. Gao R,Wang Y,Gruber MY,Hannoufa A
    miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79.
    Front Plant Sci, 2017. 8: p. 2226
    [PMID:29354153]
  5. Dotto M,Gómez MS,Soto MS,Casati P
    UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana.
    Plant Cell Environ., 2018. 41(6): p. 1394-1406
    [PMID:29447428]