PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g037390.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 388aa MW: 42632.7 Da PI: 7.1311

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g037390.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.4	6.9e-05	268	306	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Csa17g037390.1 268 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 306 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.827	256	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-11	266	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.18E-5	266	310	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-8	270	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MLNARDHNSN NTSECMSLST IHNHSLIQQQ DFPLQWPHHD QSSYHHHEGL LKIKEELSSS 60 SISDQQEGLS KFTDMLNSPV ITNYLKINEH KDYTEKLLLK TISSGFPTNG DYCSSIPSSS 120 SSSSPSSHRG NFSQIYPSVN ISSLSESRKM SMDMSNIPRP FDMNMQVFDG RLFEGNVLVP 180 PLNSQEISNL GMSRGGFPPF GLPFHHHLQQ TLHHPSSSPT HQMEMFSNEP QTSEGKRHNF 240 LMATKAGENA SKKPRVESRS SCPPFKVRKE KLGDRIAALQ QLVSPFGKTD TASVLMEAIG 300 YIKFLQSQIE TLSVPYMRAS KNRPAKASQL GSQPQEGDDE ETRDLRSRGL CLVPLSCMTY 360 VTGDGGDGGG GVGSGFWPTP PGFGGGT*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MLNARDHNSN NTSECMSLST IHNHSLIQQQ DFPLQWPHHD QSSYHHHEGL LKIKEELSSS  60
SISDQQEGLS KFTDMLNSPV ITNYLKINEH KDYTEKLLLK TISSGFPTNG DYCSSIPSSS  120
SSSSPSSHRG NFSQIYPSVN ISSLSESRKM SMDMSNIPRP FDMNMQVFDG RLFEGNVLVP  180
PLNSQEISNL GMSRGGFPPF GLPFHHHLQQ TLHHPSSSPT HQMEMFSNEP QTSEGKRHNF  240
LMATKAGENA SKKPRVESRS SCPPFKVRKE KLGDRIAALQ QLVSPFGKTD TASVLMEAIG  300
YIKFLQSQIE TLSVPYMRAS KNRPAKASQL GSQPQEGDDE ETRDLRSRGL CLVPLSCMTY  360
VTGDGGDGGG GVGSGFWPTP PGFGGGT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g037390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC012375	0.0	AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010478109.1	0.0	PREDICTED: transcription factor bHLH110 isoform X1
Refseq	XP_010478110.1	0.0	PREDICTED: transcription factor bHLH110 isoform X2
Swissprot	Q9SFZ3	0.0	BH110_ARATH; Transcription factor bHLH110
TrEMBL	D7KBT3	0.0	D7KBT3_ARALL; Uncharacterized protein
STRING	XP_010478109.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]