PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g039350.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 254aa    MW: 28792.4 Da    PI: 9.4294
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g039350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.22.3e-34151551128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 
                     lp+G++F+P+d+e++  +L++kv+++k      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      
  Csa17g039350.1  15 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVStdeegh 105
                     799***********9.89*****999956644322..22222333336**********.566677888******************733345444 PP

             NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     + +W++tgk+++v+s ++ + g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Csa17g039350.1 106 ETRWHKTGKTRPVMS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 155
                     788************.8889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-369174IPR003441NAC domain
PROSITE profilePS5100532.86615174IPR003441NAC domain
PfamPF023656.8E-1516155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKFDKVGSIK DLPSLPAGVK FDPSDKEILM HLEAKVSSDK RKLHPLIDEF IPTLEGENGI  60
CYTHPEKLPG VSKDGQVRHF FHRPSKAYTT GTRKRRKVST DEEGHETRWH KTGKTRPVMS  120
QSGEAGFKKI LVLYTNYGRQ KKPEKTNWVM HQYHLGNSED EKDGEPVLSK VFYQTQPRQC  180
GNSTEPKPKN LVNLNRFSYE NTQTGFGYEH GGKSEEASQV IRELVVHEGD GSCSFLRFTC  240
DASKGKESFM KNQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g039350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864760.0AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478220.10.0PREDICTED: NAC domain-containing protein 10
SwissprotF4HY611e-178NAC10_ARATH; NAC domain-containing protein 10
TrEMBLR0GQV51e-180R0GQV5_9BRAS; Uncharacterized protein
STRINGXP_010478220.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-180NAC domain containing protein 10