PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g042480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 235aa    MW: 27682.1 Da    PI: 10.069
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g042480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.71.9e-086186227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C f++    C yG+ C+F+H+p
  Csa17g042480.1 61 GEKVCAFYQTHRLCGYGSECRFNHPP 86
                    7889********************97 PP
2zf-CCCH23.11.3e-0798120427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C+ff r G C+ G+ C F H++
  Csa17g042480.1  98 PDCKFFKR-GACRKGSDCLFYHPK 120
                     89**9999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.055986IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-55985IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3435987IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-66186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-46384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.56894121IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-595120IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-597120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-699119IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
SEEGQIPGAE YSDAESYTRD NPKKRARTVD WRERESKMML DERSHEIYEH VLSSAYPIRP  60
GEKVCAFYQT HRLCGYGSEC RFNHPPLHEL SKMIGQKPDC KFFKRGACRK GSDCLFYHPK  120
EMDVGEQGRT LSLKPNDSER RYKTKSTYWQ ENRVRKQNQK KEDFGFGINE LGQFRDHQGS  180
NKDAQGIQLQ QRHKDVKMRK RSRSPVRRAN ESRERFGGRS PRRHELGYFK CERV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127PKKRART
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g042480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019091066.11e-157PREDICTED: putative zinc finger CCCH domain-containing protein 10
SwissprotQ9C7P16e-56C3H10_ARATH; Putative zinc finger CCCH domain-containing protein 10
TrEMBLA0A1P8AM373e-64A0A1P8AM37_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
TrEMBLA0A2H1ZED03e-64A0A2H1ZED0_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGXP_010480720.11e-146(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29600.13e-58C3H family protein