PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g048850.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 130aa    MW: 14854.5 Da    PI: 4.1795
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g048850.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind79.16.9e-251674260
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
    HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                    Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lp++Fkh+nf SF+RQLn+Y
  Csa17g048850.2 16 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFLSFIRQLNTY 74
                    9********************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.8E-27978IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-241182IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-2712121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-141639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.3E-211674IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-145466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-146779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDESNHGGSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK  60
HNNFLSFIRQ LNTYVSVVAK YIDSEREWRL KMLEDESDPS DPDFGISDED DNDSQVLPIA  120
DPMKMMMKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-181110424115Heat shock factor protein 1
5d5v_B8e-181110424115Heat shock factor protein 1
5d5v_D8e-181110424115Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g048850.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0217112e-85AL021711.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F13C5 (ESSA project).
GenBankAL1615492e-85AL161549.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49.
GenBankCP0026872e-85CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449453.14e-44PREDICTED: heat stress transcription factor A-4a
RefseqXP_010449454.14e-44PREDICTED: heat stress transcription factor A-4a
RefseqXP_010449455.14e-44PREDICTED: heat stress transcription factor A-4a
RefseqXP_010449456.14e-44PREDICTED: heat stress transcription factor A-4a
SwissprotO494031e-32HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A3P6BR833e-37A0A3P6BR83_BRACM; Uncharacterized protein
STRINGXP_010449453.12e-43(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.15e-33heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]