PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g048850.3
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 79aa    MW: 9027.03 Da    PI: 6.5138
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g048850.3genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind80.13.5e-251674260
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
    HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                    Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lp++Fkh+nf SF+RQLn+Y
  Csa17g048850.3 16 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFLSFIRQLNTY 74
                    9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-27974IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-241175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.8E-201278IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-161639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.1E-211674IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-165466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-166778IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MDESNHGGSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK  60
HNNFLSFIRQ LNTYFSVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-1711742487Heat shock factor protein 1
5d5v_B1e-1711742487Heat shock factor protein 1
5d5v_D1e-1711742487Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g048850.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0217113e-80AL021711.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F13C5 (ESSA project).
GenBankAL1615493e-80AL161549.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49.
GenBankAY1255123e-80AY125512.1 Arabidopsis thaliana AT4g18880/F13C5_50 mRNA, complete cds.
GenBankBT0010493e-80BT001049.1 Arabidopsis thaliana At4g18880/F13C5_50 mRNA, complete cds.
GenBankCP0026873e-80CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449453.12e-44PREDICTED: heat stress transcription factor A-4a
RefseqXP_010449454.12e-44PREDICTED: heat stress transcription factor A-4a
RefseqXP_010449455.12e-44PREDICTED: heat stress transcription factor A-4a
RefseqXP_010449456.12e-44PREDICTED: heat stress transcription factor A-4a
SwissprotO494031e-32HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A3P6BR831e-37A0A3P6BR83_BRACM; Uncharacterized protein
STRINGXP_010449453.16e-44(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.15e-33heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]