PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g051600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 364aa    MW: 41181.7 Da    PI: 8.5521
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g051600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.6e-32221274255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Csa17g051600.1 221 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 274
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15218274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28219274IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-23221274IPR006447Myb domain, plants
PfamPF002492.3E-7222273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSTLVSNS  60
SSKPTNHPFQ DLSLSNNSHH HQQHQHHQPH LVPNCNGSNI LTSFQFPTQQ QQQHLQGFLA  120
HDLNTHLRPI RGIPLYHNPP PHHHHRPPPP CFPFDPSSLI PSSSPSPPSL TGNNHSFNTS  180
SVSNSGLITN PNYHNHHHHH QTLNRARFMP RFPAKRSMRA PRMRWTTTLH ARFVHAVELL  240
GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTVKTTDK AAASSGQSDV YENGSSGDNN  300
SDDWMFDMNR KSRDSEELTN PLEKGNGLWT NSSGEARLHG KLIDNVAEIM LPSEVRYISF  360
CNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16222276458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16222276458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16222276458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16222276458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16222276458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16222276458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16222276458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16222276458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g051600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934910.0AB493491.1 Arabidopsis thaliana At1g32240 mRNA for hypothetical protein, partial cds, clone: RAAt1g32240.
GenBankAY0486890.0AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
GenBankBT0292110.0BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019094272.10.0PREDICTED: probable transcription factor KAN2
SwissprotQ9C6160.0KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A1P8ATH70.0A0A1P8ATH7_ARATH; Homeodomain-like superfamily protein
STRINGXP_010480826.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53872850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-172G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]