PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g055540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 364aa    MW: 41129.6 Da    PI: 6.5935
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g055540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.92.9e-10140163124
         G2-like   1 kprlrWtpeLHerFveaveqLGGs 24 
                     k r+ WtpeLHe F++av+qLGG 
  Csa17g055540.1 140 KRRMSWTPELHEVFLDAVNQLGGG 163
                     68********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-9137165IPR009057Homeodomain-like
SuperFamilySSF466894.3E-5138171IPR009057Homeodomain-like
SuperFamilySSF524025.44E-9204278No hitNo description
PfamPF007338.9E-8207279IPR001962Asparagine synthase
Gene3DG3DSA:3.40.50.6201.3E-12211278IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006529Biological Processasparagine biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0004066Molecular Functionasparagine synthase (glutamine-hydrolyzing) activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGEMEIEEIE AVLEKIWDLY DKLSDEIHLI SRSHFLKSVK PSNRSEKRKT THNHGGDDKQ  60
PGYVFIKGFA VDDNDSTMRE AKSLNATRTA LENLEDQLEF FHLGFLGLWG KRVSGTQGVA  120
FMMSQKAAFM MSFLALQSAK RRMSWTPELH EVFLDAVNQL GGGGSKNIGQ LNIYQNHQKV  180
SDTMLMNASF VFPDNTPMTK EAYYYRTIFE KHILYRQKEQ FSDGVGYSWI DGRKDHANKH  240
VSDTMLMNAS FVFPDNTPMT KEAYYYRTIF EKFFPKSAAR ATVPGGPSVA CSTEKAVEWD  300
AAWSQNLDPS GRAALGVHVA AYEGEDKSQD PRPGKVQKLA ELFEDKQGLK ATVLLILFCR  360
IDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ct9_A8e-37201323428553ASPARAGINE SYNTHETASE B
1ct9_B8e-37201323428553ASPARAGINE SYNTHETASE B
1ct9_C8e-37201323428553ASPARAGINE SYNTHETASE B
1ct9_D8e-37201323428553ASPARAGINE SYNTHETASE B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g055540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0954521e-164AF095452.1 Arabidopsis thaliana asparagine synthetase (ASN3) mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20400.12e-07G2-like family protein