PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g055570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 685aa    MW: 76023.6 Da    PI: 6.2657
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g055570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.21.4e-3062146187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+++e+laL+++r++m++++r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k+yk++ke++++r++++   +++f+qlea
  Csa17g055570.1  62 RWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSAKKCKEKFENVQKYYKRTKETRGGRHDGK--AYKFFSQLEA 146
                     8*********************************************************************86555..5******985 PP
2trihelix104.29.4e-33445529186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k e+laLi++r+ me r++++  k+ lWee+s  m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpyf++l+
  Csa17g055570.1 445 RWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYFHRLD 529
                     8*********************************************************************8.99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.86455119IPR017877Myb-like domain
SMARTSM007170.007659121IPR001005SANT/Myb domain
CDDcd122039.07E-2761126No hitNo description
PfamPF138371.1E-2061147No hitNo description
SMARTSM007170.011442504IPR001005SANT/Myb domain
PROSITE profilePS500906.667444502IPR017877Myb-like domain
PfamPF138376.0E-22444529No hitNo description
CDDcd122031.25E-29445509No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MEQVGGGGGG GNEVVEEASP ISSRPPANLE ELMRFSAAAA DDGGGGGGGG GGGSASSSSG  60
NRWPREETLA LLRIRSDMDS TFRDATLKAP LWEHVSRKLL ELGYKRSAKK CKEKFENVQK  120
YYKRTKETRG GRHDGKAYKF FSQLEALNTT PTPPPSHPPS SSLDVTPLSV ANPIIMPSTS  180
SSPFPVFSQP QPHTHTQPPQ THTVTFTPTP QPPPPMAPTF PGVTFSSHSS STASGMGSDD  240
DEDDDMDVDQ ATIAGSSSRK RKRKRGNRGG GKMMELFEGL VRQVMQKQAA MQRSFLEALE  300
KREQERLDRE EAWKRQQMSR LAREHEVMSQ ERAASASRDA AIISLIQKIT GHTIQLPPSL  360
SSQTPQPPHQ PPQPPPAAKR PQEPPLSTAQ SQLQQPIMAI PQQQILPPPP HQPEQKQQQQ  420
QQQQQQQQQE MMVSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST  480
SMKRMGYNRN AKRCKEKWEN INKYYKKVKE SNKKRPQDAK TCPYFHRLDL LYRNKVLGGG  540
AGGGTSTSGL PQEQKQSPVS AVKPPQEGDV NVQPHGSAAS SEEVEPIEES TQGTEKPEDL  600
VMRELMQQQQ QQQQQQQQQE SMIGEYEKIE ESHNYNNMEE EEEEMDEEEL DEDEKSAAFE  660
IAFQSPANRG GNGHTEPPFL TMVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112KRSAKKCKE
2258263RKRKRK
3258264RKRKRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g055570.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210450.0AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence.
GenBankAC0270350.0AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence.
GenBankAJ0032150.0AJ003215.1 Arabidopsis thaliana GTL1 gene.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478740.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
SwissprotQ9C8820.0GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBLA0A397Y2Y60.0A0A397Y2Y6_BRACM; Uncharacterized protein
TrEMBLM4FFY60.0M4FFY6_BRARP; Uncharacterized protein
STRINGXP_010478740.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62262746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.11e-100GT-2-like 1
Publications ? help Back to Top
  1. Caro E,Desvoyes B,Gutierrez C
    GTL1 keeps cell growth and nuclear ploidy under control.
    EMBO J., 2012. 31(24): p. 4483-5
    [PMID:23188085]
  2. Zheng X, et al.
    The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development.
    Sci Rep, 2016. 6: p. 27042
    [PMID:27245096]
  3. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]