PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g057040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 201aa    MW: 22725.8 Da    PI: 8.4338
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g057040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.48.3e-08171402127
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleev..ikevd..iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdk 90 
                     p + rF P+  e++ e+L + +++++ l+ +    + e++  i    Pw+  +  + + ++ + F++r + y    +++r + + g Wk  gk +
  Csa17g057040.1  17 PLCTRFAPNAREVIEEFLLPTLSQTPpLRGTGLieFGELGlfISGQRPWEPTAYPYFHVNHFWLFVRRWS-Y----ESSRdVGSFGKWKVAGKAT 106
                     7789*******************99973333331244554336667899976544445555556665544.3....3455366689********* PP

             NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                      ++s+ ++  +g  + + +     ++g +t W  heyr
  Csa17g057040.1 107 GIHSQdGRFIIGYVQKFDLV----KDGLRTGWYQHEYR 140
                     ****8444458899988888....7899*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-1013156IPR003441NAC domain
PROSITE profilePS5100514.95116158IPR003441NAC domain
PfamPF023658.0E-720140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAAQQNPLPQ GGNISVPLCT RFAPNAREVI EEFLLPTLSQ TPPLRGTGLI EFGELGLFIS  60
GQRPWEPTAY PYFHVNHFWL FVRRWSYESS RDVGSFGKWK VAGKATGIHS QDGRFIIGYV  120
QKFDLVKDGL RTGWYQHEYR RYSNATFEEV VISHLVYDSS KRDLAPDHIY HGGPDQNVVG  180
LQPAAQNVNP KHPVMIPKME *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g057040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019094506.11e-149PREDICTED: uncharacterized protein LOC109129918