PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g057080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 184aa    MW: 20799 Da    PI: 4.6627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g057080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-202069356
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++aa++ l+g+
  Csa17g057080.1 20 YRGVRRRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDAAALHLRGH 69
                    9****998.**********8...557**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-141969IPR001471AP2/ERF domain
PROSITE profilePS5103223.091976IPR001471AP2/ERF domain
SMARTSM003804.8E-351982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-311977IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-222077IPR016177DNA-binding domain
CDDcd000189.03E-182078No hitNo description
PRINTSPR003672.7E-102031IPR001471AP2/ERF domain
PRINTSPR003672.7E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MENNYIGQRE HNFSVDQVSY RGVRRRKWGK WVSEIREPGK KTRIWLGSYE TAEMAAAAYD  60
AAALHLRGHG TNLNFPELAN SFPQPESSSP EHVQAAAQEA ALMFKPGGST EPSLDSGQGI  120
SRVGLSPDQI QAINEFPLDS PRMGWMQDLE VTDYEELYGR FFGQYDRDEF FEMQQLQSIW  180
NSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-172081668ATERF1
3gcc_A5e-172081668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g057080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0101641e-157AC010164.2 Arabidopsis thaliana chromosome I BAC F14M2 genomic sequence, complete sequence.
GenBankAY5608381e-157AY560838.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g33760) mRNA, complete cds.
GenBankBT0159281e-157BT015928.1 Arabidopsis thaliana At1g33760 mRNA, complete cds.
GenBankBT0205661e-157BT020566.1 Arabidopsis thaliana At1g33760 gene, complete cds.
GenBankCP0026841e-157CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461198.11e-135PREDICTED: ethylene-responsive transcription factor ERF022
RefseqXP_010478800.11e-135PREDICTED: ethylene-responsive transcription factor ERF022
RefseqXP_010499915.11e-135PREDICTED: ethylene-responsive transcription factor ERF022
RefseqXP_019098530.11e-135PREDICTED: ethylene-responsive transcription factor ERF022
SwissprotQ9LQ281e-107ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLR0IEL81e-113R0IEL8_9BRAS; Uncharacterized protein
STRINGXP_010461198.11e-135(Camelina sativa)
STRINGXP_010478800.11e-135(Camelina sativa)
STRINGXP_010499915.11e-135(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-107ERF family protein