PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g061120.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 254aa MW: 28180.9 Da PI: 6.7308

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g061120.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.4	3.9e-13	10	51	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ tf kR++gi KK +E +LC+++++ +i s+ Csa17g061120.1 10 IANNYLRKQTFKKRKAGIVKKLHEFTTLCGVKACAVICSPYE 51 889999********************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.1E-11	1	58	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.932	1	48	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.01E-22	1	75	No hit	No description
PRINTS	PR00404	6.9E-6	2	22	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-18	2	77	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-13	10	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-6	22	37	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MKGRLKLSLI ANNYLRKQTF KKRKAGIVKK LHEFTTLCGV KACAVICSPY ENPVVWPSAE 60 GVQEVVSKVM ELPVTGHPVT ADASMVTAPN GFYGYFPDNG MTMNPNPSQH ESLVQHHVPV 120 GSVQHHVPVD SVQHHVPFGS VQHHVPVDSV QYHTPMNFDD QTQHGIYDMN LHQDMSLDPN 180 QYAYQQGSFM NLLMGHPQQM GYDEEHAHIP PLMNGNYHQL PTMDFAATGH MPSINTNTNT 240 IAGVYAPYDI NSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	23	LRKQTFKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g061120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010478907.1	1e-131	PREDICTED: agamous-like MADS-box protein AGL86
Swissprot	Q9C6V3	4e-31	AGL86_ARATH; Agamous-like MADS-box protein AGL86
TrEMBL	S6BCF0	2e-34	S6BCF0_CRUWA; Agamous-like MADS-box protein AGL92 (Fragment)
STRING	XP_010478907.1	1e-130	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31630.1	2e-33	AGAMOUS-like 86

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]