PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g062250.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 296aa MW: 33476.7 Da PI: 7.7252

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g062250.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.4e-06	137	156	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Csa17g062250.1 137 FSCHVCFKTFNRYNNLQMHM 156 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.59E-5	118	159	No hit	No description
PROSITE profile	PS50157	10.055	137	164	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.4E-4	137	156	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.41E-5	206	241	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MESPQYEISS SSSSEKPRNH FQPLDLFPNL HQNSCNNSTL IEPLPLIDWI NLNSNPNPLY 60 ADEGEEEDEE DDVEVDVDLH IGLPGFGKSG NGAKQPKKRN GKEIVTYDAG KDIENEVSGK 120 AYWIPAPEQI LIGFTHFSCH VCFKTFNRYN NLQMHMWGHG SQYRKGPESL KGTQPRAMLG 180 IPCYCCVEGC RNHIDHPRSK PLKDFRTLQT HYKRKHGHKP YSCRICGKLL AVKGDWRTHE 240 KNCGKRWVCV CGSDFKHKRS LKDHVKAFGT GHGPYPTGLF DEQASNSSVS ETLFF*

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g062250.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630477	0.0	AJ630477.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g34790.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010478920.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	0.0	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	Q700E7	0.0	Q700E7_ARATH; At1g34790
STRING	XP_010478920.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	0.0	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]