PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g062260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 159aa    MW: 17776.1 Da    PI: 10.0176
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g062260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.34.3e-21451572111
             NAM   2 ppGfrFhPtdeelvveyLkkk..vegkk..leleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     ppG+ ++P+d e++   L +k    g +  l l++  i+ v+iy+++P++L +k+k+ ++++ +f skr+k  + gkr++r +k gyW+at  +k
  Csa17g062260.1  45 PPGVNYRPKDLEVI-SLLGRKqyYLGGNrdL-LATLsIHLVNIYESNPEELSEKFKKaNDTDRFFISKRNKMGKDGKRQKRDAKGGYWHATVASK 137
                     9*************.6666653433333332.23335**************965554266788999999999999******************** PP

             NAM  91 evlskkgelvglkktLvfykg 111
                     ++ + ++ lvg k+ L +y g
  Csa17g062260.1 138 KIDA-GQGLVGYKTALDYYVG 157
                     **99.999***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-2339158IPR003441NAC domain
PROSITE profilePS5100524.49444158IPR003441NAC domain
PfamPF023659.5E-845155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSMPGRNKRK ERSLPEPEPE PSEIPSSSAD DHQLSSSPST RPCFPPGVNY RPKDLEVISL  60
LGRKQYYLGG NRDLLATLSI HLVNIYESNP EELSEKFKKA NDTDRFFISK RNKMGKDGKR  120
QKRDAKGGYW HATVASKKID AGQGLVGYKT ALDYYVGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g062260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431411.13e-97PREDICTED: NAC transcription factor 29-like
RefseqXP_010431419.16e-96PREDICTED: NAC domain-containing protein 53-like
TrEMBLD7LVH13e-46D7LVH1_ARALL; Uncharacterized protein
STRINGXP_010431411.11e-96(Camelina sativa)
STRINGXP_010431419.12e-95(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.19e-38NAC domain containing protein 64