PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g064710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 261aa    MW: 30118.7 Da    PI: 10.0455
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g064710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.3e-1881128148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ll+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
   Csa17g064710.1  81 KGAWTKEEDQLLIDYIRNHGEGSWRSLPKSAGLLRCGKSCRLRWINYL 128
                      79******************************99************97 PP
2Myb_DNA-binding52.41.2e-16134178147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T  Ed+++v+++ ++G++ W++Ia +++ gRt++++k++w+++
   Csa17g064710.1 134 RGNFTDSEDQIIVKLHSLFGNK-WSLIAGKLQ-GRTDNEIKNYWNTH 178
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-2472131IPR009057Homeodomain-like
PROSITE profilePS5129416.02576128IPR017930Myb domain
SuperFamilySSF466891.01E-2880175IPR009057Homeodomain-like
SMARTSM007172.3E-1380130IPR001005SANT/Myb domain
PfamPF002492.0E-1681128IPR001005SANT/Myb domain
CDDcd001672.38E-1083128No hitNo description
PROSITE profilePS5129426.883129183IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-26132183IPR009057Homeodomain-like
SMARTSM007171.5E-15133181IPR001005SANT/Myb domain
PfamPF002491.5E-14134178IPR001005SANT/Myb domain
CDDcd001672.59E-10136179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
LSSLLLQNKE TKSKERKKKK VTYQIFSTHK AKHQLGQSHF LLYNTSLQIL LSLLSHYYTH  60
IVKIIIIMGR SPCCEKAHSN KGAWTKEEDQ LLIDYIRNHG EGSWRSLPKS AGLLRCGKSC  120
RLRWINYLRP DLKRGNFTDS EDQIIVKLHS LFGNKWSLIA GKLQGRTDNE IKNYWNTHIK  180
RKLLSRGIDP NTHRSMIQPT DEDLLLRVDR DYRFDSVDSE LNLDLTLGSS PNRWAARDVC  240
VCNLGSREPC INCQTAKWVL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-278018326128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. {ECO:0000250|UniProtKB:Q38850}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g064710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2079911e-134AF207991.1 Arabidopsis thaliana putative transcription factor (MYB8) mRNA, complete cds.
GenBankAY5195611e-134AY519561.1 Arabidopsis thaliana MYB transcription factor (At1g35515) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478947.11e-143PREDICTED: transcription repressor MYB6-like
SwissprotQ9SDS81e-98MYB8_ARATH; Transcription factor MYB8
TrEMBLR0GLS93e-94R0GLS9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010478947.11e-142(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35515.11e-101high response to osmotic stress 10
Publications ? help Back to Top
  1. Zhu J, et al.
    Retraction for Zhu et al., HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(31): p. 13972
    [PMID:20622156]