PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g070520.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 368aa MW: 40427.8 Da PI: 9.6373

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g070520.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30	1.2e-09	222	280	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L ++ +l+ ++l +e+ Csa17g070520.1 222 KRAKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGTSELNTEN 280 9***********************************************99999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.5E-14	218	282	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.645	220	283	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.62E-10	222	272	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.6E-10	222	277	No hit	No description
Pfam	PF00170	3.6E-8	222	280	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.38E-21	223	271	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MEGGGPNQTI LSEIERMPEA PRQRISHHRR ARSETFFSGE SIDDLLLFDP SDIDFSSLDF 60 LNTPPPLQPQ PSPMSVDSPP EETSSNGVPP NNPLPPKPFG RHVRSFSVDS DFFDDLGVTE 120 EQFTGKSLAT SSGEKKKKGN HHNRSRVTEE QFTGKSLATS SGEKKKKGNH HNRSSSMDGE 180 TSSALFNIES ILASVSGKDG GGKKNMGMGG DRLAELALLD PKRAKRILAN RQSAARSKER 240 KIRYTGELER KVQTLQNEAT TLSAQVTMLQ RGTSELNTEN KHLKMRLQAL EQQAELRDAL 300 NEALRDELNR LKIAAGEISQ GNGNAYNGGQ FSSQQSTMNQ FGNNKNQQMS SNGQPSHPSF 360 MDFTKRG*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MEGGGPNQTI LSEIERMPEA PRQRISHHRR ARSETFFSGE SIDDLLLFDP SDIDFSSLDF  60
LNTPPPLQPQ PSPMSVDSPP EETSSNGVPP NNPLPPKPFG RHVRSFSVDS DFFDDLGVTE  120
EQFTGKSLAT SSGEKKKKGN HHNRSRVTEE QFTGKSLATS SGEKKKKGNH HNRSSSMDGE  180
TSSALFNIES ILASVSGKDG GGKKNMGMGG DRLAELALLD PKRAKRILAN RQSAARSKER  240
KIRYTGELER KVQTLQNEAT TLSAQVTMLQ RGTSELNTEN KHLKMRLQAL EQQAELRDAL  300
NEALRDELNR LKIAAGEISQ GNGNAYNGGQ FSSQQSTMNQ FGNNKNQQMS SNGQPSHPSF  360
MDFTKRG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions. {ECO:0000269\|PubMed:11432846, ECO:0000269\|PubMed:12124400, ECO:0000269\|PubMed:15108305, ECO:0000269\|PubMed:15824315, ECO:0000269\|PubMed:17947581, ECO:0000269\|PubMed:19820165, ECO:0000269\|PubMed:20547563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g070520.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Transcriptionally activated during the acquisition of pluripotentiality (in protoplasts) by pericentromeric chromatin decondensation and DNA demethylation. Targeted to degradation by the proteasome by VBF and Agrobacterium virF in SCF(VBF) and SCF(virF) E3 ubiquitin ligase complexes after mediating T-DNA translocation to the nucleus. {ECO:0000269\|PubMed:15108305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY085857	0.0	AY085857.1 Arabidopsis thaliana clone 19086 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010479019.1	0.0	PREDICTED: transcription factor VIP1 isoform X2
Refseq	XP_019095362.1	0.0	PREDICTED: transcription factor VIP1 isoform X1
Swissprot	Q9MA75	0.0	VIP1_ARATH; Transcription factor VIP1
TrEMBL	D7KNM8	0.0	D7KNM8_ARALL; Vire2-interacting protein VIP1
STRING	XP_010479020.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7993	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G43700.1	1e-169	VIRE2-interacting protein 1

Publications ? help Back to Top
Wang Y, et al. The putative Agrobacterium transcriptional activator-like virulence protein VirD5 may target T-complex to prevent the degradation of coat proteins in the plant cell nucleus. New Phytol., 2014. 203(4): p. 1266-81 [PMID:24865527] Xu DB, et al. A G-protein β subunit, AGB1, negatively regulates the ABA response and drought tolerance by down-regulating AtMPK6-related pathway in Arabidopsis. PLoS ONE, 2015. 10(1): p. e0116385 [PMID:25635681] Chen J, et al. ZmbZIP91 regulates expression of starch synthesis-related genes by binding to ACTCAT elements in their promoters. J. Exp. Bot., 2016. 67(5): p. 1327-38 [PMID:26689855] Tsugama D,Liu S,Takano T VIP1 is very important/interesting protein 1 regulating touch responses of Arabidopsis. Plant Signal Behav, 2016. 11(6): p. e1187358 [PMID:27171129] Tsugama D,Liu S,Takano T The bZIP Protein VIP1 Is Involved in Touch Responses in Arabidopsis Roots. Plant Physiol., 2016. 171(2): p. 1355-65 [PMID:27208231] Takeo K,Ito T Subcellular localization of VIP1 is regulated by phosphorylation and 14-3-3 proteins. FEBS Lett., 2017. 591(13): p. 1972-1981 [PMID:28542772] Wang L,Lacroix B,Guo J,Citovsky V The Agrobacterium VirE2 effector interacts with multiple members of the Arabidopsis VIP1 protein family. Mol. Plant Pathol., 2018. 19(5): p. 1172-1183 [PMID:28802023]