PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g074290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 211aa    MW: 23246.4 Da    PI: 10.1936
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g074290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.8e-06180202223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      Cp Cg++F+  ++L+ H+ + H
  Csa17g074290.1 180 ACPQCGEVFPKLESLEIHQAVrH 202
                     6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.887179207IPR007087Zinc finger, C2H2
PROSITE patternPS000280179202IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAPLPFIPET TQKQRRLSSD PKKNTKKKTS QPPPQTQTQK LKQKTVPSTS SSSSSSWSQI  60
KNLLSCKQIE GPRVHEPSKI TSSSCGSSLC KFSDVIYGNA RVIHRSDHSP ESSNLGQDAR  120
LLTRKPVNRE SSSSVRSNGC GAYSSYTTSK AMHFRKLSGC YECHMIVDPS RYPIAPRICA  180
CPQCGEVFPK LESLEIHQAV RHAGMHPLFN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11427RRLSSDPKKNTKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g074290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288790.0AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019094245.11e-145PREDICTED: uncharacterized protein LOC104759815 isoform X2
TrEMBLR0IT111e-119R0IT11_9BRAS; Uncharacterized protein
STRINGXP_010480999.11e-143(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.18e-47C2H2-like zinc finger protein