PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g076670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 81aa    MW: 8889.08 Da    PI: 7.304
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g076670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-10934227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++C++++ tG C+ G +Ck++H++
  Csa17g076670.1  9 EERECSTYLVTGNCNLGKNCKYHHPK 34
                    5799********************96 PP
2zf-CCCH29.99.2e-105679326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    ++ C++f+r+G Ck G++CkF H+
  Csa17g076670.1 56 QAVCPDFSRFGLCKSGPTCKFDHS 79
                    689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.2E-4734IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.314735IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6835IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-8934IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-41333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-85079IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-45380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2815380IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-75679IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-45879IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MSELPERPEE RECSTYLVTG NCNLGKNCKY HHPKNITPIE PGLALNDNGL PLRPNQAVCP  60
DFSRFGLCKS GPTCKFDHST *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g076670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010479232.18e-54PREDICTED: zinc finger CCCH domain-containing protein 13-like
SwissprotQ3ECU82e-37C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
TrEMBLR0GT251e-36R0GT25_9BRAS; Uncharacterized protein
STRINGXP_010479232.13e-53(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.19e-40C3H family protein