PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g080870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 531aa    MW: 60969.6 Da    PI: 9.4441
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g080870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.91.9e-22245302155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                     k+r+ Wt++LH++F+ea+e  GG+ekA Pk +l++   mk++gLt+++v+SHLQk+R+
  Csa17g080870.1 245 KQRMTWTKDLHKKFLEAIEMNGGIEKANPKVLLDClqgMKIQGLTRNNVASHLQKHRI 302
                     79****************************986543339******************7 PP
2Response_reg31.77.7e-1215453107
                     CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
    Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                     mp++dGl++lk+i+++  +lp++++++ ++ e + +a+  Ga +++ Kp++++ +
  Csa17g080870.1   1 MPKIDGLQALKSIASKM-DLPVMIMSDDNQTESVMKAIVHGACEYVLKPVQEDVI 54 
                     9************9866.9******************************988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011021.118162IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.7E-12171IPR011006CheY-like superfamily
CDDcd001563.59E-8161No hitNo description
PfamPF000724.4E-8155IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.0E-15187No hitNo description
SuperFamilySSF466891.09E-12243305IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-20243306IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-17245302IPR006447Myb domain, plants
PfamPF002491.5E-6247301IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MPKIDGLQAL KSIASKMDLP VMIMSDDNQT ESVMKAIVHG ACEYVLKPVQ EDVIANLWQH  60
IVRKKVMSKR NISPPVQSDL AQSDGSRQRK VDSKIVDQEQ NIGKKEESGE KRPLITWNRE  120
LQRVQSDLLQ INVFNQHNDY HKTRNQDSCE QNIGKKEERV ETRPWMTWNK ANQPFQFNPV  180
QINGLAQQNY YSKTINQDKG EQSIERAAKK PCMRAEEKEL VHTDDSNNGD SVEIIDKRVW  240
KKTRKQRMTW TKDLHKKFLE AIEMNGGIEK ANPKVLLDCL QGMKIQGLTR NNVASHLQKH  300
RIYLEEKQIP KQTQIIGWST EYVAAPSLQG PNNVHTGISQ YVRNGPALNP IHQNQYQNGA  360
VNPIQHNQYL NGAVNPIQQN QYQNGEVNLI QQKQYQNEIV NPIQQSQYQM GVVNPIQQKQ  420
YQNGAVNPMK QNQYQNGALN SIQQNDLNRA VNPIQQNNEY QKGYLAMNKN LFITNPSLPH  480
VSYFDNQPRQ PQQQQSSSQF NYLTSNEELG KASNIYALDP QLTYPSLSYM *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g080870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481042.10.0PREDICTED: putative two-component response regulator ARR19
SwissprotQ9M9B91e-46ARR19_ARATH; Putative two-component response regulator ARR19
TrEMBLR0IK331e-156R0IK33_9BRAS; Uncharacterized protein
STRINGXP_010481042.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.23e-98response regulator 19