PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g083260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 335aa    MW: 37525.4 Da    PI: 7.1363
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g083260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94e-32193248156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++WtpeLH+rFv+a++qLGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+
  Csa17g083260.1 193 KQRRCWTPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 248
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.451190250IPR017930Myb domain
SuperFamilySSF466895.82E-18191251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-28192251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-26193248IPR006447Myb domain, plants
PfamPF002493.1E-9195246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGSLGDELSL GSICGSRRGI IMNVVAVEEE HVKKLEEEKR KIESSQLELP LSLQLLNDAI  60
LYLKEEKKRC SEMNTQPLLK DFISLDKPMS EEIDMQLLKR DELTREKKFQ QWRANDDHIS  120
NTKTKNKLGV QRNGEKSSML LVPKVETGLG LGLTSSSIRR KGIVASSRGF TSNSMPQLPP  180
QQPAFLQQQA LRKQRRCWTP ELHRRFVDAL QQLGGPGVAT PKQIREHMQE EGLTNDEVKS  240
HLQKYRLHIR KPNSNAEKQS AVVLGFNLWN SSSQEEEETG EGGESSKISN SQSDSPQGPL  300
QLPSTTTTTG GDSSMEDVED AKSESFQMER LRSP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00193DAPTransfer from AT1G49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g083260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216310.0AK221631.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-96-G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010479391.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ9FX840.0HHO6_ARATH; Transcription factor HHO6
TrEMBLR0IIC60.0R0IIC6_9BRAS; Uncharacterized protein
STRINGXP_010479391.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139271824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.11e-136G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]