PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g085550.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 398aa MW: 43251.2 Da PI: 9.2591

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g085550.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.5	3.3e-14	318	367	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+ e+ k Csa17g085550.1 318 RRQKRMIKNRESAARSRARKQAYTLELEAEIESLKQLNQDLQKKQAEIMK 367 79**************************************9877655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-14	314	379	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.507	316	368	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.1E-12	318	368	IPR004827	Basic-leucine zipper domain
CDD	cd14707	9.75E-24	318	369	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.4E-14	318	378	No hit	No description
SuperFamily	SSF57959	5.25E-10	318	367	No hit	No description
PROSITE pattern	PS00036	0	321	336	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MGTHIDFDNL GGDSSGGNGC NTYHSKPLAR QSSLYSLTFD ELQSTLGEPG KDFGSMNMDE 60 LLKNIWTAEE AQAFMTTTPY SVAASGPSGF VPGGNVLQRQ GSLTLPRTLS QKTVDEVWKH 120 LNSKDGSNGN SRTDVPERQQ TLGEMTLEDF LHRAGVVKED TNSTQQNENS SGFYANNGAA 180 GLGFGFGQPN QNSISFNGNN DSMIYNQAPG LGLKVGGKVQ QQQKPHQQQQ HPYQRLPPTI 240 FPKQANVAFA PVNLVNRGLF DAGVDGPVNS NMGGAGVTVA ATSPGTSSAE NNTWSSPVPY 300 VFGRGRRSNT GLEKVVERRQ KRMIKNRESA ARSRARKQAY TLELEAEIES LKQLNQDLQK 360 KQAEIMKSQN SEVKELLKQP PCLAKTLCLR RTLTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MGTHIDFDNL GGDSSGGNGC NTYHSKPLAR QSSLYSLTFD ELQSTLGEPG KDFGSMNMDE  60
LLKNIWTAEE AQAFMTTTPY SVAASGPSGF VPGGNVLQRQ GSLTLPRTLS QKTVDEVWKH  120
LNSKDGSNGN SRTDVPERQQ TLGEMTLEDF LHRAGVVKED TNSTQQNENS SGFYANNGAA  180
GLGFGFGQPN QNSISFNGNN DSMIYNQAPG LGLKVGGKVQ QQQKPHQQQQ HPYQRLPPTI  240
FPKQANVAFA PVNLVNRGLF DAGVDGPVNS NMGGAGVTVA ATSPGTSSAE NNTWSSPVPY  300
VFGRGRRSNT GLEKVVERRQ KRMIKNRESA ARSRARKQAY TLELEAEIES LKQLNQDLQK  360
KQAEIMKSQN SEVKELLKQP PCLAKTLCLR RTLTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00087	SELEX	Transfer from AT1G49720	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g085550.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF093544	0.0	AF093544.1 Arabidopsis thaliana clone 1 abscisic acid responsive elements-binding factor (ABRE) mRNA, complete cds.
GenBank	AK226983	0.0	AK226983.1 Arabidopsis thaliana mRNA for abscisic acid responsive elements-binding factor, complete cds, clone: RAFL09-41-C22.
GenBank	BT008575	0.0	BT008575.1 Arabidopsis thaliana clone U19471 putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.
GenBank	BT008647	0.0	BT008647.1 Arabidopsis thaliana clone RAFL09-77-C02 (R19471) putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010479441.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X1
Swissprot	Q9M7Q5	0.0	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	A0A178WH34	0.0	A0A178WH34_ARATH; AtABF1
STRING	XP_010479442.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	0.0	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]