PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g088340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 820aa    MW: 90657.8 Da    PI: 5.5939
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g088340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS182.72.6e-561633323173
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      +L+ecA av+s dlel+++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal++++ +     e l+++++++e++P++kf++  
  Csa17g088340.1 163 GVLYECAMAVESYDLELTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPT---GPELLTYMHILYEACPYFKFGYES 254
                     689****************************************************************9...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                     aN aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+  ++  le +g+rL k+Ae +g
  Csa17g088340.1 255 ANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPKVRITGIDDPRSSfaRQGGLELVGQRLGKLAEMCG 332
                     *****************************************************999999***************9887 PP
2GRAS447.96.8e-1374518193374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      +L+ecA av+s dlel+++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal++++ +     e l+++++++e++P++kf++  
  Csa17g088340.1 451 GVLYECAMAVESYDLELTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPT---GPELLTYMHILYEACPYFKFGYES 542
                     689****************************************************************9...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+  ++  le +g+rL k+Ae +gvpfef+  +a  ++++e
  Csa17g088340.1 543 ANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPKVRITGIDDPRSSfaRQGGLELVGQRLGKLAEMCGVPFEFHG-AALCCTEVE 636
                     *****************************************************999999**************************.899****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+L v++gEalaVn+ l lh+++desv++e++rd++L+lvk+lsP+vv++veqea++n+++Fl rf+e++++y a+f+s+++kl+r+++eri+v
  Csa17g088340.1 637 IEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKRLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINV 731
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+++l+re+vn++aceg er+erhe l+kWr+r+++aGFkp+pls+++++++k ll+ ++++ y++ee++g+l+lgWk++pL++ +aWr
  Csa17g088340.1 732 EQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEK-YTLEERDGALYLGWKNQPLITSCAWR 819
                     ************************************************************65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.72135332IPR005202Transcription factor GRAS
PfamPF035148.8E-54163332IPR005202Transcription factor GRAS
PROSITE profilePS5098566.624423800IPR005202Transcription factor GRAS
PfamPF035142.3E-134451819IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MEATQKHMIQ DGSSMFYHPP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNMNNNNNNN  60
NNSSSTTSFS SNESPISQAN NNNSSRFTHS PEDNNNSPLS GSSATNNNET ELSLMLKDLE  120
TAMMEPDLDN SFNHQGGFGQ QHRVVSSAMY RSMEMISRGD LKGVLYECAM AVESYDLELT  180
DWLISQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT GPELLTYMHI  240
LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPKVR  300
ITGIDDPRSS FARQGGLELV GQRLGKLAEM CGTKSHPCLN MNNNNNNNNN SSSTTSFSSN  360
ESPISQANNN NSSRFTHSPE DNNNSPLSGS SATNNNETEL SLMLKDLETA MMEPDLDNSF  420
NHQGGFGQQH RVVSSAMYRS MEMISRGDLK GVLYECAMAV ESYDLELTDW LISQLQQMVS  480
VSGEPVQRLG AYMLEGLVAR LASSGSSIYK ALRCKDPTGP ELLTYMHILY EACPYFKFGY  540
ESANGAIAEA VKNESFVHII DFQISQGGQW VSLIRALGAR PGGPPKVRIT GIDDPRSSFA  600
RQGGLELVGQ RLGKLAEMCG VPFEFHGAAL CCTEVEIEKL GVRNGEALAV NFPLVLHHMP  660
DESVTVENHR DRLLRLVKRL SPNVVTLVEQ EANTNTAPFL PRFVETMNHY LAVFESIDVK  720
LARDHKERIN VEQHCLAREV VNLIACEGVE REERHEPLGK WRSRFHMAGF KPYPLSSYVN  780
ATIKGLLESY SEKYTLEERD GALYLGWKNQ PLITSCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-5818481926375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g088340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125610.0AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAC0792790.0AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence.
GenBankAY0349290.0AY034929.1 Arabidopsis thaliana putative scarecrow protein (At1g50600) mRNA, partial cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500634.10.0PREDICTED: scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLD7KGQ40.0D7KGQ4_ARALL; Uncharacterized protein
STRINGBostr.26675s0117.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]