PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g089820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 245aa    MW: 27592 Da    PI: 6.7895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g089820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-1188134453
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                     ++  rE++RRdr+N++f eL ++l +    + +K +K++i   A++ +++
  Csa17g089820.1  88 SKACREKQRRDRLNDKFTELSSILEPG---RTPKTDKVAIINDAIRMVNH 134
                     5678**********************8...8**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.41184135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.10E-887140No hitNo description
Gene3DG3DSA:4.10.280.108.6E-1288157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1288153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-988134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-890141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
FDHQNHIAAS RQGYLGEMVS PENMNWLSDY PLIDSAFSDQ NPTFPWQIDG SSSVSVEVDG  60
FLCDSDVDKE PGSRKRIKTE SCTAGSSSKA CREKQRRDRL NDKFTELSSI LEPGRTPKTD  120
KVAIINDAIR MVNHARDEAQ KLKDLNSSLQ DKIKELKNEK SELRDEKHKL KIEKERIEQQ  180
LKEIKTQHQP QSCFLPNPPT LSQAQAPGSK LVPFTTYPGF AMWQFMPPAA VDTSQDHVLR  240
PPVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g089820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886320.0AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0856190.0AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence.
GenBankBT0024330.0BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010479562.11e-169PREDICTED: transcription factor bHLH115
SwissprotQ9C6821e-151BH115_ARATH; Transcription factor bHLH115
TrEMBLD7KGW71e-151D7KGW7_ARALL; Basic helix-loop-helix family protein
STRINGXP_010479562.11e-168(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-148bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]