PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g095460.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 454aa MW: 50928.4 Da PI: 6.7935

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g095460.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	420.7	1.2e-128	45	453	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaal........... 81 l++lL+++A++vs++++++aq+lL+ ls ++sp+gd+++Rl++ ft+AL+ r++r +++ +++a ++ +++e+++ ++ + + Csa17g095460.1 45 LRRLLFTAADFVSQSNFTAAQNLLSILSLNSSPYGDSTERLVHLFTKALSVRINRlqqEQDPTAEAAATCTANEMTMGNNSSTVftssvckeqfl 139 689*********************************************9999952233446666655555555533333333566789999 PP GRAS 82 ...............klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgsk 155 +++++P+++f+hltaNqaIl+a+e++ ++Hi+D+disqGlQWp+L+qaLa+R+ ++ pslRiTg+g+ + Csa17g095460.1 140 frtknnnsdfescyyLWLNQLTPFIRFGHLTANQAILDATETNdnGALHILDLDISQGLQWPPLMQALAERSsnpnSPRPSLRITGCGR----DV 230 ****99999876444********************9977899*******************987767789******....9 PP GRAS 156 eeleetgerLakfAeelgvpfefnvl......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244 l++tg+rL++fA++lg++f+f++l +a l +++l +L++ +gE++aVn+v+ lh+++++++++ ++L+++ksl+P++v+++e+ Csa17g095460.1 231 AGLNRTGDRLTRFANSLGLQFQFHTLviveedIAGLLLQIRLLALSFVHGETIAVNCVHFLHKFFNDDGDMIG---HFLSVIKSLNPRIVTMAER 322 ***********************976332222233344666777888******************99...*************** PP GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 ea+h+++sFl+rf+ea+++y+a+fdslea+lp++s+er ++E++++g+ei +vva+e +er++rh+++e W+e+++++GF +vp++++a +qakl Csa17g095460.1 323 EANHGDHSFLNRFSEAVDHYVAIFDSLEATLPPNSRERLTLEQRWFGKEIFDVVAAEARERKQRHRRFEIWEEMMKRFGFVNVPIGSFALSQAKL 417 ******************************************************************************************* PP GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 llr ++ s+gy+++ ++sl+lgW++r L+svS+W+ Csa17g095460.1 418 LLRLHYpSEGYNLQFLNNSLFLGWQNRLLFSVSSWK 453 *********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.637	19	432	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.2E-126	45	453	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MLTSFKSSSS SSEDATATTT TENPPPFCQL ASSSSSASTS ASHHLRRLLF TAADFVSQSN 60 FTAAQNLLSI LSLNSSPYGD STERLVHLFT KALSVRINRL QQEQDPTAEA AATCTANEMT 120 MGNNSSTVFT SSVCKEQFLF RTKNNNSDFE SCYYLWLNQL TPFIRFGHLT ANQAILDATE 180 TNDNGALHIL DLDISQGLQW PPLMQALAER SSNPNSPRPS LRITGCGRDV AGLNRTGDRL 240 TRFANSLGLQ FQFHTLVIVE EDIAGLLLQI RLLALSFVHG ETIAVNCVHF LHKFFNDDGD 300 MIGHFLSVIK SLNPRIVTMA EREANHGDHS FLNRFSEAVD HYVAIFDSLE ATLPPNSRER 360 LTLEQRWFGK EIFDVVAAEA RERKQRHRRF EIWEEMMKRF GFVNVPIGSF ALSQAKLLLR 420 LHYPSEGYNL QFLNNSLFLG WQNRLLFSVS SWK*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MLTSFKSSSS SSEDATATTT TENPPPFCQL ASSSSSASTS ASHHLRRLLF TAADFVSQSN  60
FTAAQNLLSI LSLNSSPYGD STERLVHLFT KALSVRINRL QQEQDPTAEA AATCTANEMT  120
MGNNSSTVFT SSVCKEQFLF RTKNNNSDFE SCYYLWLNQL TPFIRFGHLT ANQAILDATE  180
TNDNGALHIL DLDISQGLQW PPLMQALAER SSNPNSPRPS LRITGCGRDV AGLNRTGDRL  240
TRFANSLGLQ FQFHTLVIVE EDIAGLLLQI RLLALSFVHG ETIAVNCVHF LHKFFNDDGD  300
MIGHFLSVIK SLNPRIVTMA EREANHGDHS FLNRFSEAVD HYVAIFDSLE ATLPPNSRER  360
LTLEQRWFGK EIFDVVAAEA RERKQRHRRF EIWEEMMKRF GFVNVPIGSF ALSQAKLLLR  420
LHYPSEGYNL QFLNNSLFLG WQNRLLFSVS SWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-59	53	452	27	378	Protein SCARECROW
5b3h_A	5e-59	53	452	26	377	Protein SCARECROW
5b3h_D	5e-59	53	452	26	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g095460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ303349	0.0	AJ303349.1 Capsella rubella ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6 (partial).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010480099.1	0.0	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	0.0	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A178WEV4	0.0	A0A178WEV4_ARATH; SCL18
TrEMBL	D7KMZ6	0.0	D7KMZ6_ARALL; Uncharacterized protein
STRING	XP_010480099.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11329	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	0.0	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]