PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g095480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 624aa    MW: 69675.4 Da    PI: 4.2528
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g095480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.1e-31329386259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+vkg+++prsY++Ct +gC+vkk+ver a+d k++++ Y g Hnh+
  Csa17g095480.1 329 EDGFRWRKYGQKVVKGNPNPRSYFKCTVNGCNVKKHVERGADDFKILVTSYDGIHNHP 386
                     7********************************************************8 PP
2WRKY45.61.4e-144705082159
                     -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       sY++Ct +gC+vkk+ver a+d k++++ Y g Hnh+
  Csa17g095480.1 470 YSSYFKCTVNGCNVKKHVERGADDFKILVTSYDGIHNHP 508
                     569***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-30314388IPR003657WRKY domain
PROSITE profilePS5081131.835323388IPR003657WRKY domain
SuperFamilySSF1182901.12E-25323388IPR003657WRKY domain
SMARTSM007742.4E-35328387IPR003657WRKY domain
PfamPF031065.3E-23329386IPR003657WRKY domain
SMARTSM007742.7E-7464509IPR003657WRKY domain
SuperFamilySSF1182901.57E-11467510IPR003657WRKY domain
PfamPF031065.3E-9467508IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-12469510IPR003657WRKY domain
PROSITE profilePS5081117.018472510IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MSDFDGNFVE MTSCWTPLST PSPRTILAMM GQTNDGLNPI SQIFPQTNLP RDHADQSGQR  60
PGLGERLATK VGLNLPRLDI ENRSPLGAFF RSSAAPSPIG AITPGFSPSI LLQSPKMVTD  120
SSQIIPQSLA TTYKPEEMVK PSGEDNATAM IFNNDLPYQS ISVDPHPLDA FDDILTEESI  180
YMPSYEPHVE RPIGAPFVPS FEPEIVGDTN VNFNSILESQ SEDENEDETD FEDEDEDADE  240
DEDEEEDEDE DEEEDEDEED EVEIEVEEED EEQEQEEVDH VDDFADFDDA PPSPKRRRFE  300
VSSNMIGATR TSKAQRIILQ MESDEDNPED GFRWRKYGQK VVKGNPNPRS YFKCTVNGCN  360
VKKHVERGAD DFKILVTSYD GIHNHPPPPT RSRLTSGPRN RSGTTMTQNH GNRTSRAPLP  420
SSLDITSMEM MPITSFSTPQ VDLTRVYKTG LSKLPNIPAY DQNPDXSLFY SSYFKCTVNG  480
CNVKKHVERG ADDFKILVTS YDGIHNHPPP PTRSRLTSGP RNRSGITMSQ NHGNRTSRAP  540
VPSSSVITSM EMMPITSFTP QVDLTRVYKT GLSKLPNIPA YDQNPDNTYR NEEPMMNVAH  600
DGSGIYGGIM HRLFNGFGMN FDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-24319388877Probable WRKY transcription factor 4
2lex_A7e-24319388877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:16293693}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g095480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894513.11e-178probable WRKY transcription factor 10
SwissprotQ9LG051e-155WRK10_ARATH; Probable WRKY transcription factor 10
TrEMBLD7KMZ81e-176D7KMZ8_ARALL; WRKY10
STRINGXP_010481189.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102991733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.11e-90WRKY DNA-binding protein 10
Publications ? help Back to Top
  1. Li J,Nie X,Tan JL,Berger F
    Integration of epigenetic and genetic controls of seed size by cytokinin in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(38): p. 15479-84
    [PMID:24003120]
  2. Fatihi A,Zbierzak AM,Dörmann P
    Alterations in seed development gene expression affect size and oil content of Arabidopsis seeds.
    Plant Physiol., 2013. 163(2): p. 973-85
    [PMID:24014578]
  3. Liu P, et al.
    Arabidopsis RAN1 mediates seed development through its parental ratio by affecting the onset of endosperm cellularization.
    Mol Plant, 2014. 7(8): p. 1316-1328
    [PMID:24719465]
  4. Xiao YG,Sun QB,Kang XJ,Chen CB,Ni M
    SHORT HYPOCOTYL UNDER BLUE1 or HAIKU2 mixepression alters canola and Arabidopsis seed development.
    New Phytol., 2016. 209(2): p. 636-49
    [PMID:26389843]
  5. Meng LS,Wang YB,Loake GJ,Jiang JH
    Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade.
    Front Plant Sci, 2016. 7: p. 1645
    [PMID:27857719]
  6. Meng LS,Wang YB,Loake GJ,Jiang JH
    Corrigendum: Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade.
    Front Plant Sci, 2017. 8: p. 1073
    [PMID:28616014]