PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g002420.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 1154aa MW: 128612 Da PI: 6.9856

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g002420.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.5	1.3e-12	98	142	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r ++Rt+ q+ s+ qky Csa18g002420.1 98 PWTEEEHRMFLLGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKY 142 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.515	3	20	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	19.44	91	147	IPR017930	Myb domain
SuperFamily	SSF46689	9.72E-17	93	148	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.9E-18	94	146	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.0E-10	95	141	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-11	95	145	IPR001005	SANT/Myb domain
CDD	cd00167	1.61E-8	98	143	No hit	No description
Pfam	PF00249	3.0E-10	98	142	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1154 aa Download sequence Send to blast
MTRRCSHCNH NGHNSRTCPN RGVKLFGVRL TEGSIRKSAS MGNLSHYTGS GSGGHGGTGS 60 ITPGSPGDVP DHVPGDGYAS EDFVAGSSSS RERKKGTPWT EEEHRMFLLG LQKLGKGDWR 120 GISRNYVTTR TPTQVASHAQ KYFIRQSNVS RRKRRSSLFD MVPDEVGDIP MDLQEPDGEN 180 IPVETEMQSA DSVHQTLAAP SSLQAPSILE IEECESMDST NSTTGEPAAT AAAAASSSAS 240 RLEETTQLQS QPQTQPQPQP QPQPQPQQQL PGSFPILYPT YFSPYYPFPF PIWPAGYVPE 300 PPKKEETHEI LRPTAVHSKA PINVDELLGM SKLSLAESNK NGESDQSLSL KLAMLPHSYT 360 VDSLSQSQDL ASAILAASTP PNISDACSSV ESFLQSHTPD QCRHFFSVTF PSLICKIFGF 420 GDTAAASPAQ SSSSPPNGWI DLISAANDLD SAERVFALLS PSGILMSSIF AVDKLSLVKY 480 VFPTERLPEY ARFMLSSEKD RTALSNLCPF LKGKIEEDSL RGSSYEVRLN VFEYYMFWLS 540 YYPVCRGNSE TSASVVPIQK RKVSRLQNWT HIKGFPGSSS SSSNKRDSDQ KLECNLYLRL 600 LYSYLKAFVP VFDLNAHQPY RSSLLHYGYG YDVSVMTKAE FLVNVFLHYW LVENDFSPFP 660 VVTAKSFGVA PPFRSAVEEI PPTCGLEEVV KLLVKYLNLS WVTSGVGTEN YVEYGESPRW 720 KTPTSGSSFH VANLNLRPLT SWNTHLQRPL YRYILRSFLF CPTSGSSMKK ASQVFSIWVM 780 YLEPWMISLD DFSDLEAASN GSVKDVKQDE SYESRVCGYT SLWQSYVISN YLYYSSLVMH 840 FIGFAHKFLH TDPEIVTQMV LKVMSALTSS KELLVLMKDI DKAFHSKQTG PGSSKVNELS 900 RFAPSIREKL KDWEDGLCES NADGSFLHEN WNKDLKLFSD GEDGGQQLLQ LFILRAEAEL 960 QTVSEKNVTE SLKCVDSLKS AVSNFFGGHV IKPIAFSLEP DRPQKNRDEV FKPRGAGNQI 1020 AGSVKYKGDW MTRPISEDEV RWMAELLINI SIWLNDRLGL NQSETNKGKK ENPESVSYVD 1080 VSGEDVRNIT GAGDAARMLF RGMMMVCGMV LQLMKRFGIR VNLRVMASKK FLMLLFLYIL 1140 FLGLKRIVTR IIW*

Sequence ? help Back to Top

Protein Sequence Length: 1154 aa Download sequence Send to blast

MTRRCSHCNH NGHNSRTCPN RGVKLFGVRL TEGSIRKSAS MGNLSHYTGS GSGGHGGTGS  60
ITPGSPGDVP DHVPGDGYAS EDFVAGSSSS RERKKGTPWT EEEHRMFLLG LQKLGKGDWR  120
GISRNYVTTR TPTQVASHAQ KYFIRQSNVS RRKRRSSLFD MVPDEVGDIP MDLQEPDGEN  180
IPVETEMQSA DSVHQTLAAP SSLQAPSILE IEECESMDST NSTTGEPAAT AAAAASSSAS  240
RLEETTQLQS QPQTQPQPQP QPQPQPQQQL PGSFPILYPT YFSPYYPFPF PIWPAGYVPE  300
PPKKEETHEI LRPTAVHSKA PINVDELLGM SKLSLAESNK NGESDQSLSL KLAMLPHSYT  360
VDSLSQSQDL ASAILAASTP PNISDACSSV ESFLQSHTPD QCRHFFSVTF PSLICKIFGF  420
GDTAAASPAQ SSSSPPNGWI DLISAANDLD SAERVFALLS PSGILMSSIF AVDKLSLVKY  480
VFPTERLPEY ARFMLSSEKD RTALSNLCPF LKGKIEEDSL RGSSYEVRLN VFEYYMFWLS  540
YYPVCRGNSE TSASVVPIQK RKVSRLQNWT HIKGFPGSSS SSSNKRDSDQ KLECNLYLRL  600
LYSYLKAFVP VFDLNAHQPY RSSLLHYGYG YDVSVMTKAE FLVNVFLHYW LVENDFSPFP  660
VVTAKSFGVA PPFRSAVEEI PPTCGLEEVV KLLVKYLNLS WVTSGVGTEN YVEYGESPRW  720
KTPTSGSSFH VANLNLRPLT SWNTHLQRPL YRYILRSFLF CPTSGSSMKK ASQVFSIWVM  780
YLEPWMISLD DFSDLEAASN GSVKDVKQDE SYESRVCGYT SLWQSYVISN YLYYSSLVMH  840
FIGFAHKFLH TDPEIVTQMV LKVMSALTSS KELLVLMKDI DKAFHSKQTG PGSSKVNELS  900
RFAPSIREKL KDWEDGLCES NADGSFLHEN WNKDLKLFSD GEDGGQQLLQ LFILRAEAEL  960
QTVSEKNVTE SLKCVDSLKS AVSNFFGGHV IKPIAFSLEP DRPQKNRDEV FKPRGAGNQI  1020
AGSVKYKGDW MTRPISEDEV RWMAELLINI SIWLNDRLGL NQSETNKGKK ENPESVSYVD  1080
VSGEDVRNIT GAGDAARMLF RGMMMVCGMV LQLMKRFGIR VNLRVMASKK FLMLLFLYIL  1140
FLGLKRIVTR IIW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g002420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB018117	0.0	AB018117.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019095438.1	0.0	PREDICTED: uncharacterized protein LOC104763005
TrEMBL	R0GP31	0.0	R0GP31_9BRAS; Uncharacterized protein
STRING	Cagra.1415s0003.1.p	0.0	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-172	MYB_related family protein