PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g005150.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WOX
Protein Properties Length: 318aa    MW: 35216.4 Da    PI: 6.736
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g005150.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-1755115257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++R+++++eq+++Le+ F++   +p +ee++++  +l    ++ +++V++WFqNr+ + k+
  Csa18g005150.2  55 KPRWNPKPEQIRILESIFNSgIVNPPREEIQRIRIRLqeygQIGDANVFYWFQNRKSRAKH 115
                     89*****************99*************************************995 PP
2Wus_type_Homeobox110.87.6e-3654116264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P++eeiqri+ +L+eyG+i+d+NVfyWFQNrk+R ++k
     Csa18g005150.2  54 PKPRWNPKPEQIRILESIFNSGIVNPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHK 116
                        579**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.17151116IPR001356Homeobox domain
SuperFamilySSF466897.7E-1253118IPR009057Homeodomain-like
SMARTSM003894.7E-753120IPR001356Homeobox domain
CDDcd000861.07E-754116No hitNo description
PfamPF000462.8E-1555115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-655115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSSSSNKNWP SMFKSKPCNN NHHHQQHESG SPSYMHYSNC NISSSFSSDR VPDPKPRWNP  60
KPEQIRILES IFNSGIVNPP REEIQRIRIR LQEYGQIGDA NVFYWFQNRK SRAKHKLRVH  120
HKSPKTSKKD KIISPGIDAD HCFGLVHQET GLFPVQNNEM LVTQPAGYPS SVQNDLSVAQ  180
SGFGFGDFVV PVVREEGVAF PGNDESLDKI PAINFYGGDG NGGGGNCFSP LPLTTNQSQE  240
RAIVFHGGEN VEDCVSPDKL TIFINDMLFE VAAGLFNVKE AFGNNAILIN SFGQPILTDE  300
NGVTFQSLQN GAVYYLI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g005150.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:22427333}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2514000.0AY251400.1 Arabidopsis thaliana WOX8 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481511.10.0PREDICTED: WUSCHEL-related homeobox 8-like
SwissprotQ6X7J51e-172WOX8_ARATH; WUSCHEL-related homeobox 8
TrEMBLR0EV120.0R0EV12_9BRAS; Uncharacterized protein
STRINGXP_010481511.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.11e-146WUSCHEL related homeobox 8
Publications ? help Back to Top
  1. Xiao W, et al.
    DNA methylation is critical for Arabidopsis embryogenesis and seed viability.
    Plant Cell, 2006. 18(4): p. 805-14
    [PMID:16531498]
  2. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  3. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
    J. Exp. Bot., 2014. 65(22): p. 6543-52
    [PMID:25205582]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]