PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g009570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 194aa    MW: 21457.4 Da    PI: 10.3276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g009570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-182574255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr ++ +gr++AeIr+      k+++++lg+f+t eeAa+a++ a+++++g
  Csa18g009570.1 25 HFRGVRKRP-WGRYAAEIRElG----KKTSVWLGTFDTVEEAARAYDTAAREFRG 74
                    69*******.**********55....46************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-132574IPR001471AP2/ERF domain
CDDcd000185.72E-272582No hitNo description
PROSITE profilePS5103221.5222582IPR001471AP2/ERF domain
SMARTSM003801.8E-342588IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-292582IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-212583IPR016177DNA-binding domain
PRINTSPR003677.5E-102637IPR001471AP2/ERF domain
PRINTSPR003677.5E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAPKQVNGSS NAAAKITLTT RKEVHFRGVR KRPWGRYAAE IRELGKKTSV WLGTFDTVEE  60
AARAYDTAAR EFRGSKAKTN FPLPGESFAS TMVNDGGENG SYVNRKAARE ITHQRFPFAC  120
QRERKVVGGY AAAGFFFDPS RATALRAQLS WAYPVLLDPV NIELSIGIWE TVKVEPRREL  180
NLDLNLAPPV VDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-182583261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-182283264ATERF1
3gcc_A2e-182283264ATERF1
5wx9_A7e-1826821572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g009570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481767.11e-141PREDICTED: ethylene-responsive transcription factor 9-like
SwissprotQ9FE671e-107ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A178UA111e-105A0A178UA11_ARATH; ERF9
STRINGXP_010481767.11e-140(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-109erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]