PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g009710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 325aa    MW: 35163.3 Da    PI: 4.9654
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g009710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.71.8e-16243299460
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                      +r+rr++kNRe+A rsR+RK+a++ eLe+ +++Le+eN+ L ke+e  +ke ++  
  Csa18g009710.1 243 AQRQRRMIKNRESAARSRERKQAYQVELETLAAKLEEENELLSKEIEDKRKERYQKL 299
                     79********************************************99999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-13239295No hitNo description
SMARTSM003383.9E-12240304IPR004827Basic-leucine zipper domain
PfamPF001701.8E-15242300IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.197242294IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-10244296No hitNo description
CDDcd147072.74E-19244289No hitNo description
PROSITE patternPS000360247262IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MASFQVMRSS NSRNSDLSHR IPSSSSSSIR PPQQQFMRDL TIGGYCGRND GGLLYSSTSM  60
TVEGILHDAF ASDPPAPTES SLLDASITLM DASPAPTTVV SDAVDHGGGG GTETTREGRS  120
VDEVWRDMVS GEGKGMKEET QEEIMTLEDF LAKAAGEDEG GAAVTTDDLD VKIPPPTNYG  180
FDHSAPPHNP FQMIDKVEGS IVAFGNGFDV YGGGGGVGAG GGGGGARGKR ARVMVEPLDK  240
VAAQRQRRMI KNRESAARSR ERKQAYQVEL ETLAAKLEEE NELLSKEIED KRKERYQKLM  300
DCVVPVIEKP QPPRFLRRIR SLEW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g009710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481781.10.0PREDICTED: G-box-binding factor 4-like
SwissprotP427772e-66GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A178UQ191e-168A0A178UQ19_ARATH; Uncharacterized protein
TrEMBLQ8LCQ71e-168Q8LCQ7_ARATH; Uncharacterized protein
STRINGXP_010481781.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-127bZIP family protein