PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g010020.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HSF

Protein Properties

Length: 307aa MW: 35961.2 Da PI: 9.7094

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g010020.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.6	3.1e-36	19	112	1	103
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 aFl+k+y+i+ed+++++++sws+++nsf+v+++e+fa +Lp+ Fkh+nf+SFvRQLn+YgFkkv++e+ weF++++F kg+++ll+ Csa18g010020.1 19 AFLTKTYNIVEDSSTNSIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKVNTER---------WEFSNEYFLKGQRNLLK 104 69**************************************************************999.........************* PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 +ikr+k++ Csa18g010020.1 105 NIKRRKTS 112 ***986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.31E-34	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.8E-36	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.6E-53	16	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.2E-31	20	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-17	20	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-17	58	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	59	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-17	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:3.40.532.10	1.5E-4	243	284	IPR001578	Peptidase C12, ubiquitin carboxyl-terminal hydrolase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0004843	Molecular Function	thiol-dependent ubiquitin-specific protease activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEFNLPVPLE GLRETGPTAF LTKTYNIVED SSTNSIVSWS RDNNSFIVWE PETFALICLP 60 RCFKHNNFSS FVRQLNTYGF KKVNTERWEF SNEYFLKGQR NLLKNIKRRK TSSSHTHTQS 120 LKGGRFGLEG EIEELRSDRV ALVLELERLR RKQETMKTYL HSMEEKLKVT EVKQEMMMDF 180 LLKKTKKPSF FKGSRKRKMQ GFKNRERRQE VHETIVKAEP EEYVNDTADQ YGGLTSQLQK 240 GLAVLVVLFL CPINKKSEEE RIEQDKEIKE NAHSAKVYFM KQPVTCGSLI WFNLFHSLFW 300 SSELSD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-23	4	111	13	131	Heat shock factor protein 1
5d5v_B	2e-23	4	111	13	131	Heat shock factor protein 1
5d5v_D	2e-23	4	111	13	131	Heat shock factor protein 1
5d8k_B	1e-23	19	113	4	109	Heat shock factor protein 2
5d8l_B	1e-23	19	113	4	109	Heat shock factor protein 2
5d8l_D	1e-23	19	113	4	109	Heat shock factor protein 2
5d8l_F	1e-23	19	113	4	109	Heat shock factor protein 2
5d8l_H	1e-23	19	113	4	109	Heat shock factor protein 2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	108	LKNIKRR
2	193	198	SRKRKM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g010020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ447035	1e-134	DQ447035.1 Arabidopsis thaliana clone pENTR221-At5g43840 heat shock transcription factor family protein (At5g43840) mRNA, complete cds.
GenBank	DQ653345	1e-134	DQ653345.1 Arabidopsis thaliana clone 0000012923_0000009316 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010445879.1	1e-161	PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor A-6a-like
Swissprot	Q1PDN3	1e-125	HFA6A_ARATH; Heat stress transcription factor A-6a
TrEMBL	D7MNK4	1e-131	D7MNK4_ARALL; AT-HSFA6A
STRING	XP_010445879.1	1e-160	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15683	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43840.1	1e-119	heat shock transcription factor A6A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]