PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g010220.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 187aa    MW: 21966.5 Da    PI: 10.5312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g010220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-103382155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r+r h   Er RR++ ++++  L +llP a     +K++K++i+ekAv+ I +Lq
  Csa18g010220.1 33 RCRRHMLKERTRREKQKQSYLALHSLLPYA-----TKNDKSTIVEKAVDEIVKLQ 82
                    6788999***********************.....9*************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-122795IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.18E-83086No hitNo description
PROSITE profilePS5088812.5063281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-73382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-83698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-43887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSSSKVNVKK RMVNLLRTNW EEKKNAIAPE KERCRRHMLK ERTRREKQKQ SYLALHSLLP  60
YATKNDKSTI VEKAVDEIVK LQRLKKELER RIKMIEAKSA KDGHNDMTET KVRFSLQEPL  120
SGLDSMVEVL HCLKSMGTKL KTVHANFSPH EFSTTMNIET QIRGEEVEKR VERRLQENEW  180
KFLFLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g010220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0653901e-176AY065390.1 Arabidopsis thaliana unknown protein (At5g43650) mRNA, complete cds.
GenBankAY0967181e-176AY096718.1 Arabidopsis thaliana unknown protein (At5g43650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481841.11e-133PREDICTED: transcription factor bHLH92-like
SwissprotQ9FIX51e-112BH092_ARATH; Transcription factor bHLH92
TrEMBLD7MXG41e-113D7MXG4_ARALL; Basic helix-loop-helix family protein
STRINGXP_010481841.11e-133(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-104bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]