PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g010390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 136aa    MW: 14748.1 Da    PI: 9.4121
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g010390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.2e-211565255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr+++ +g+++AeIrd ++ g   r++lg+f+taeeAa+a+++a+ +++g
  Csa18g010390.1 15 KFRGVRRRP-WGKYAAEIRDSRKHG--ERIWLGTFDTAEEAARAYDQAAYSMRG 65
                    79*******.**********65443..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-321575IPR001471AP2/ERF domain
SMARTSM003802.4E-351579IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-231575IPR016177DNA-binding domain
CDDcd000181.38E-251574No hitNo description
PfamPF008473.4E-151565IPR001471AP2/ERF domain
PROSITE profilePS5103223.5381573IPR001471AP2/ERF domain
PRINTSPR003671.7E-111627IPR001471AP2/ERF domain
PRINTSPR003671.7E-113955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0010186Biological Processpositive regulation of cellular defense response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090332Biological Processstomatal closure
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MDQGGRGRRG AEHGKFRGVR RRPWGKYAAE IRDSRKHGER IWLGTFDTAE EAARAYDQAA  60
YSMRGQAAIL NFPHEYNMGS GGSSSSAMAG SSSSSASGAS SSSSSRQVFE FEYLDDSVLE  120
ELLEQGENTN KAKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-6111351131Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00029PBMTransfer from AT5G43410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g010390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481863.15e-94PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LSX01e-60ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLR0GUN62e-62R0GUN6_9BRAS; Uncharacterized protein
STRINGXP_010481863.12e-93(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.16e-45ERF family protein
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]