PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g010550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 316aa    MW: 36078.4 Da    PI: 6.5096
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g010550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.94.2e-28113169258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     dD+y+WrKYGqK++k+s++prsYY+C  + C++kk+vers ++p++ +itYeg H h
  Csa18g010550.1 113 DDEYKWRKYGQKTIKNSPNPRSYYKCINPICNAKKQVERSIDEPNTYIITYEGFHFH 169
                     8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-26106169IPR003657WRKY domain
PROSITE profilePS5081125.178107172IPR003657WRKY domain
SuperFamilySSF1182903.01E-24108170IPR003657WRKY domain
SMARTSM007741.0E-32112171IPR003657WRKY domain
PfamPF031061.9E-23113169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAEEELSEWT RTYDNNAVED LFVNDPPLFF LPQEQQHRLM PNEDSITNTF VSLPVNSGPR  60
IQDMPNALAV VETQTHPVQE ISISTVQQLE RSTLSKADRY TLKVKNYTNG MCDDEYKWRK  120
YGQKTIKNSP NPRSYYKCIN PICNAKKQVE RSIDEPNTYI ITYEGFHFHY AYPFFPPVKT  180
HRPNKKAKTL KHDAQDKLIK KTSQTQDESK KAHLIEHAYQ NHSAYRAQEY TPLNLEDELF  240
LPVDHCRRQQ GLLEDVVAPA KITTPARDSV LAASSSDSSS RTCSPPLSPS SLCWSPNVNI  300
GFSDEILDLI GSYNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-171111691674Probable WRKY transcription factor 4
2lex_A2e-171111691674Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g010550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481875.10.0PREDICTED: probable WRKY transcription factor 49
SwissprotQ9FHR71e-133WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLD7MP901e-143D7MP90_ARALL; Uncharacterized protein
STRINGXP_010481875.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-123WRKY DNA-binding protein 49