PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g011150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 229aa    MW: 26537.4 Da    PI: 9.3957
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g011150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer85.46.3e-2764118358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     k rY eC+kNhAa++G+  +DGC+Ef+++  ee + ++l+CaACgCHRnFHR e  
  Csa18g011150.1  64 KPRYGECRKNHAADIGTIPYDGCREFVTA-AEEEEDHSLNCAACGCHRNFHREELI 118
                     679*************************9.555599****************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015661.1E-2366116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-2366116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.28567116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1667118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-20156227IPR009057Homeodomain-like
SuperFamilySSF466892.99E-12165227IPR009057Homeodomain-like
PROSITE profilePS500718.503167228IPR001356Homeobox domain
TIGRFAMsTIGR015655.1E-31170226IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDEIKPKEEE KLKRGRNVKP ICRETGDHVH YPPTTTTRKP KSKPTRTQHA PPPILESIFK  60
VTHKPRYGEC RKNHAADIGT IPYDGCREFV TAAEEEEDHS LNCAACGCHR NFHREELISD  120
NGVAETVLEV LKISSLQFRE IFCSPYGGGK SKAKKKKEEK GEDLVEKRVK RLKTKFTAEQ  180
TEKMKDYAEK LRWKVRPEMR DEVEEFCVEI GVNRKKFKIW MNNHKDKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-131692261774ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g011150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481944.11e-169PREDICTED: zinc-finger homeodomain protein 13-like
SwissprotQ9FMY71e-111ZHD13_ARATH; Zinc-finger homeodomain protein 13
TrEMBLA0A0G4NSG51e-108A0A0G4NSG5_ARATH; Homeobox protein 27
TrEMBLA0A384L2F91e-108A0A384L2F9_ARATH; ZHD13
STRINGXP_010481944.11e-168(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM158881113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.11e-102homeobox protein 27