PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g011270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 232aa    MW: 26284.1 Da    PI: 10.355
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g011270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.6e-17132221198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f++++ gk+ +   +tl de+g+++e  +    k+ +  l++GW +F+ a++L  gD++vF+l++ + f  +v 
  Csa18g011270.1 132 FVKSMLQSHVSGGFWLGLPVQFCRSYLGKHDG--VITLIDEEGEEYETIH--LAKRTG--LSGGWMGFAIAHNLAYGDTLVFELVRPTAF--KVY 218
                     89************************666544..7***************..555544..************************987888..777 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  Csa18g011270.1 219 IIR 221
                     776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-24126222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-19127221IPR015300DNA-binding pseudobarrel domain
CDDcd100175.03E-25130221No hitNo description
PROSITE profilePS5086311.984132223IPR003340B3 DNA binding domain
SMARTSM010193.5E-25132223IPR003340B3 DNA binding domain
PfamPF023623.2E-14132221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVVAKQSNYE EFRLKRVEEN KKRMEALNLP KLSQNLNPTS LKTSPMKKRC IPRTPEKQMV  60
IVRRSSRLSN SSSTPVYKEV DLHRVQNRRR GVSKSKRRDL SNRVYVSDKI RDEAIARAEK  120
FQADLGSDYP SFVKSMLQSH VSGGFWLGLP VQFCRSYLGK HDGVITLIDE EGEEYETIHL  180
AKRTGLSGGW MGFAIAHNLA YGDTLVFELV RPTAFKVYII RVGSSGESSE I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g011270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076471e-63AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
GenBankCP0026881e-63CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481961.11e-172PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
SwissprotQ9FMZ41e-120Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A2H1ZE861e-126A0A2H1ZE86_ARATH; AP2/B3-like transcriptional factor family protein
STRINGXP_010481961.11e-171(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-122B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]