PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g012430.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

BBR-BPC

Protein Properties

Length: 109aa MW: 11958.8 Da PI: 9.6218

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g012430.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	250.5	1.1e-76	2	108	196	301
GAGA_bind 196 lvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhW 289 ++ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhW Csa18g012430.1 2 VGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHW 96 58*****************************************************************************88******** PP GAGA_bind 290 AkHGtnkfvtir 301 AkHGtn+++ti+ Csa18g012430.1 97 AKHGTNRYITIK 108 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.3E-35	1	108	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.5E-72	2	108	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MVGLNQVVYD ETTMPPPVCS CTGVLRQCYK WGNGGWQSSC CTTTLSMYPL PALPNKRHAR 60 VGGRKMSGSA FNKLLSRLAA EGHHDLSNPV DLKDHWAKHG TNRYITIK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g012430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB016888	1e-154	AB016888.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDH9.
GenBank	AK221752	1e-154	AK221752.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-54-A10.
GenBank	AK227246	1e-154	AK227246.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL11-01-O04.
GenBank	AY088564	1e-154	AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence.
GenBank	AY380572	1e-154	AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds.
GenBank	BT024874	1e-154	BT024874.1 Arabidopsis thaliana At5g42520 mRNA, complete cds.
GenBank	CP002688	1e-154	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	EF123107	1e-154	EF123107.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) gene, complete cds.
GenBank	EF123108	1e-154	EF123108.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006280750.1	8e-78	protein BASIC PENTACYSTEINE6 isoform X2
Refseq	XP_010481981.1	8e-78	PREDICTED: protein BASIC PENTACYSTEINE6-like
Swissprot	Q8L999	2e-78	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	R0GR44	2e-76	R0GR44_9BRAS; Uncharacterized protein
STRING	Cagra.9562s0001.1.p	4e-77	(Capsella grandiflora)
STRING	XP_010481981.1	3e-77	(Camelina sativa)
STRING	XP_010497662.1	3e-77	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6169	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	6e-81	basic pentacysteine 6