PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g014220.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 493aa    MW: 55184.9 Da    PI: 6.6705
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g014220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.42.1e-1401224922374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +  L++cA+a+s++dl +a++++++l++++s +g+p+qRl ay++e+L a+l++s+s++yk+l+  +++   s+e l+++++++ev+P++kf+++
  Csa18g014220.1 122 RADLVSCAKAMSENDLMMANSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLSSSGSSIYKSLNRCPEP--ASTELLSYMHILYEVCPYFKFGYM 214
                     678************************************************************666665..499********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea+++e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++ +s   +   l+ +g+rLak+A++++vpfefn+ v+ + +++
  Csa18g014220.1 215 SANGAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDTTSAyaRGGGLSIVGNRLAKLAKQFNVPFEFNP-VSVSAAEV 308
                     *****************************************************998899999************************.7999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L v+pgEalaVn+++ lh+++desvs+e++rd++L++vkslsPkvv++veqe+++n++ F+ rf+e+++yy+a+f+s++++lpr++++ri+
  Csa18g014220.1 309 KPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRIN 403
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+++l+r++vn++acega+r+erhe l+kW++r+e+aGF+++pls  +++++k+llr+++++ yr+ee++g+l+lgW++r Lv+ +aW+
  Csa18g014220.1 404 VEQHCLARDVVNIIACEGADRVERHELLGKWKSRFEMAGFTSYPLSPLVNSTIKSLLRTYSNK-YRLEERDGALYLGWMHRDLVASCAWK 492
                     *************************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.82795473IPR005202Transcription factor GRAS
PfamPF035147.2E-138122492IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MYKQPRQEIE AYSFEPNPSG KLRYLPVNNS RKRFCTFEPS PDSPAYNALS SSTATYEDTC  60
GSCVTDDLND FKHKIKEIET VMMGPDSLDL VVDGTDSFDS TACQEINSWR STLEAISRRD  120
LRADLVSCAK AMSENDLMMA NSMMEKLRQM VSVSGEPIQR LGAYLLEGLV AQLSSSGSSI  180
YKSLNRCPEP ASTELLSYMH ILYEVCPYFK FGYMSANGAI AEAMKEENRV HIIDFQIGQG  240
SQWVTLIQAF AARPGGPPRI RITGIDDTTS AYARGGGLSI VGNRLAKLAK QFNVPFEFNP  300
VSVSAAEVKP KNLGVRPGEA LAVNFAFVLH HMPDESVSTE NHRDRLLRMV KSLSPKVVTL  360
VEQESNTNTA AFFPRFMETM NYYAAMFESI DVTLPRDHKQ RINVEQHCLA RDVVNIIACE  420
GADRVERHEL LGKWKSRFEM AGFTSYPLSP LVNSTIKSLL RTYSNKYRLE ERDGALYLGW  480
MHRDLVASCA WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-661254928375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g014220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1534430.0AF153443.1 Arabidopsis thaliana phytochrome A signal transduction 1 protein (PAT1) mRNA, complete cds.
GenBankAK3172520.0AK317252.1 Arabidopsis thaliana AT5G48150 mRNA, complete cds, clone: RAFL22-43-D17.
GenBankAK3177470.0AK317747.1 Arabidopsis thaliana AT5G48150 mRNA, complete cds, clone: RAFL22-04-F15.
GenBankBT0253260.0BT025326.1 Arabidopsis thaliana At5g48150 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482060.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010482061.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010482062.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010482063.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLR0G9L10.0R0G9L1_9BRAS; Uncharacterized protein
STRINGXP_010482060.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]