PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g018890.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 380aa MW: 42364.8 Da PI: 6.3395

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g018890.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95	5.1e-30	205	258	6	59
-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 6 nWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +WrKYGqK vk+s++prsYYrCt+ C vkk+vers++dp++v +tYeg+H+h+ Csa18g018890.1 205 QWRKYGQKAVKNSPYPRSYYRCTTVACGVKKRVERSSDDPSIVMTTYEGQHTHP 258 7****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.7E-28	194	260	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-25	204	260	IPR003657	WRKY domain
PROSITE profile	PS50811	27.577	205	260	IPR003657	WRKY domain
Pfam	PF03106	6.1E-24	205	258	IPR003657	WRKY domain
SMART	SM00774	6.3E-32	205	259	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MEKKIEEDHH HHHHQEQQQQ EIKNTETKIE HQTRQEQEQR QQQVSQASSS SNIMANLVTS 60 SDHHHHQLEL AAGNNLSSIF DTSSLPFPYS YFEDQSSNNP NSFLDLLRQD HQFASSSNSS 120 SFSFDAFPLP NNNNNNHFFT DLPLPQAESS EVVNTAPTSP NSTSFSSSSN EAANDNNNSG 180 KEVTVKDQEE GDQQQDQKGT TTKPQWRKYG QKAVKNSPYP RSYYRCTTVA CGVKKRVERS 240 SDDPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDHGAT TASSSSFSIP QPRYLLTQHH 300 QPYNMYNNNS LSMISRSSSD GTFVNAGLSS SFPGFGYDMS KASTSTSSSI RDHGLLQDIL 360 PSQIRSDSVN TQTNEEVKK*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MEKKIEEDHH HHHHQEQQQQ EIKNTETKIE HQTRQEQEQR QQQVSQASSS SNIMANLVTS  60
SDHHHHQLEL AAGNNLSSIF DTSSLPFPYS YFEDQSSNNP NSFLDLLRQD HQFASSSNSS  120
SFSFDAFPLP NNNNNNHFFT DLPLPQAESS EVVNTAPTSP NSTSFSSSSN EAANDNNNSG  180
KEVTVKDQEE GDQQQDQKGT TTKPQWRKYG QKAVKNSPYP RSYYRCTTVA CGVKKRVERS  240
SDDPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDHGAT TASSSSFSIP QPRYLLTQHH  300
QPYNMYNNNS LSMISRSSSD GTFVNAGLSS SFPGFGYDMS KASTSTSSSI RDHGLLQDIL  360
PSQIRSDSVN TQTNEEVKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-20	205	260	22	77	Probable WRKY transcription factor 4
2lex_A	2e-20	205	260	22	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g018890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF442397	0.0	AF442397.1 Arabidopsis thaliana WRKY transcription factor 48 (WRKY48) mRNA, complete cds.
GenBank	AY063870	0.0	AY063870.1 Arabidopsis thaliana unknown protein (At5g49520) mRNA, complete cds.
GenBank	AY091224	0.0	AY091224.1 Arabidopsis thaliana unknown protein (At5g49520) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010440671.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	1e-173	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	V4KQS3	1e-167	V4KQS3_EUTSA; Uncharacterized protein
STRING	XP_010440671.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-139	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]