PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g021250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YC
Protein Properties Length: 225aa    MW: 24704.1 Da    PI: 4.334
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g021250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC132.11.8e-41361351100
           NF-YC   1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                     q++ f ++qi++a++ +nhelP arikki+k+d++v+mi+ eaP+llskace++i++lt+rswl++ e  ++ lk+sdi+ avtr   f+flvdi
  Csa18g021250.1  36 QIRDFCIEQIGNASNTRNHELPPARIKKIMKSDPNVNMIAGEAPILLSKACEMLIVDLTMRSWLNTVERGQKKLKRSDISVAVTRGLSFTFLVDI 130
                     7899******************************************************************************************* PP

           NF-YC  96 vprde 100
                     vprde
  Csa18g021250.1 131 VPRDE 135
                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.39E-2147135IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.5E-2648118IPR009072Histone-fold
PfamPF008083.2E-1655118IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
METNADHHQR PLLPRPSFSN LLLSSFYPRP LPYPLQIRDF CIEQIGNASN TRNHELPPAR  60
IKKIMKSDPN VNMIAGEAPI LLSKACEMLI VDLTMRSWLN TVERGQKKLK RSDISVAVTR  120
GLSFTFLVDI VPRDESVNVV DPRFVDMLIP RSEDLPPGMV LGHPVVGCNG MYFIPPQMQE  180
LPAAPCDGEE EEAVGDGEEA AGDLEEAAGD QEEAAGEIEE NSGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-2942133495NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g021250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485030.11e-165PREDICTED: nuclear transcription factor Y subunit C-7-like
SwissprotQ9FGP84e-66NFYC7_ARATH; Nuclear transcription factor Y subunit C-7
TrEMBLC0SVT11e-63C0SVT1_ARATH; Uncharacterized protein At5g50470 (Fragment)
STRINGXP_010485030.11e-164(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2021046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50470.12e-63nuclear factor Y, subunit C7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]