PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g021260.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NF-YC

Protein Properties

Length: 174aa MW: 19467.6 Da PI: 4.3918

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g021260.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	166.3	4e-52	23	120	2	99
NF-YC 2 lksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ++ +w++q+e++tdfkn++lPlarikki+kad+dv+m+sa+aPvl++kace+fi++lt rsw haeenk +tl+ksdi+aav++t ++dfl+d+v Csa18g021260.1 23 IRDYWIEQMENVTDFKNRQLPLARIKKIMKADPDVHMVSADAPVLFAKACEMFIMDLTSRSWRHAEENKHHTLQKSDISAAVASTYTYDFLLDVV 117 789******************************************************************************************** PP NF-YC 97 prd 99 p+d Csa18g021260.1 118 PKD 120 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.2E-30	27	131	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	8.4E-34	33	104	IPR009072	Histone-fold
Pfam	PF00808	1.6E-21	41	104	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MENNNQLPPS YSQPQPQTES SNIRDYWIEQ MENVTDFKNR QLPLARIKKI MKADPDVHMV 60 SADAPVLFAK ACEMFIMDLT SRSWRHAEEN KHHTLQKSDI SAAVASTYTY DFLLDVVPKD 120 VDPGFAPMPH PDGVPQYYYP PGIYPSPPTQ AWPEEAGEEE DEAEGSGRNG GGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-41	29	119	5	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g021260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010482362.1	1e-128	PREDICTED: nuclear transcription factor Y subunit C-6-like
Swissprot	Q9FGP7	2e-79	NFYC6_ARATH; Nuclear transcription factor Y subunit C-6
TrEMBL	A0A384KFQ7	5e-77	A0A384KFQ7_ARATH; NF-YC6
TrEMBL	C0SVT2	5e-77	C0SVT2_ARATH; Uncharacterized protein At5g50480 (Fragment)
STRING	XP_010482362.1	1e-127	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM478	28	160

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50480.1	2e-65	nuclear factor Y, subunit C6

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]