PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g022650.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 198aa MW: 22212.3 Da PI: 9.6319

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g022650.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.6e-07	28	79	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr lP ++K ++ + Av +Ik+ q Csa18g022650.1 28 KLLHRNIERQRRQEMAILFASLRNQLPLkY---IKGKRAMSDHVNGAVTFIKDTQ 79 567999********************77...99999999********9866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.3E-12	23	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.44E-7	24	83	No hit	No description
PROSITE profile	PS50888	10.842	26	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-5	28	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	28	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MDPCNNPKKT RRQSHMPQVG DETKEEKKLL HRNIERQRRQ EMAILFASLR NQLPLKYIKG 60 KRAMSDHVNG AVTFIKDTQT RIKELSARRD ELKRETGEPT TSQTRSGSGS GSSRSEPATV 120 MVQPCVSGFE VVVTSSASGL EAWPLSRVLE VLHEQGLEVI SSLTARVNER LMYTIQVEVN 180 SFGCFDLAWL QQKLIDA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g022650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493789	0.0	AB493789.1 Arabidopsis thaliana At5g51790 mRNA for hypothetical protein, partial cds, clone: RAAt5g51790.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010482522.1	1e-146	PREDICTED: transcription factor bHLH120-like isoform X2
Swissprot	Q9FLI0	1e-118	BH120_ARATH; Transcription factor bHLH120
TrEMBL	A0A1P8BH39	1e-115	A0A1P8BH39_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	XP_010482522.1	1e-145	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-118	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]