PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g022730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 203aa    MW: 23228 Da    PI: 9.8345
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g022730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.47.9e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien + rqvtfskRr g++KKA+ELSvLCda+va +ifs++g+lye++s
  Csa18g022730.1  9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAMIFSQKGRLYEFAS 59
                    68***********************************************86 PP
2K-box58.52.8e-20851681194
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     e+  + l++e   + k+ie L+  +R+l+G++L  +s+keLq + +q+eksl  +Rs+K +l+ +++++l  ke+el++e  +L
  Csa18g022730.1  85 EQYVQGLKKETVTMVKKIEVLEVHNRKLMGQGLAFCSVKELQDIATQIEKSLHIVRSTKAKLYEDELKKLEAKERELKDERVRL 168
                     56678999**************999*****************************************************998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.371161IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-29323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-30375IPR002100Transcription factor, MADS-box
CDDcd002652.46E-40373No hitNo description
PfamPF003193.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.34288178IPR002487Transcription factor, K-box
PfamPF014861.7E-1989171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFAST  60
DVQKTIKRYA EYKRECFGAE THPLEQYVQG LKKETVTMVK KIEVLEVHNR KLMGQGLAFC  120
SVKELQDIAT QIEKSLHIVR STKAKLYEDE LKKLEAKERE LKDERVRLCG RVGERPMGMP  180
SGSKDKEDVE TDLFIGFPES RP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-20172172Myocyte-specific enhancer factor 2B
1tqe_Q6e-20172172Myocyte-specific enhancer factor 2B
1tqe_R6e-20172172Myocyte-specific enhancer factor 2B
1tqe_S6e-20172172Myocyte-specific enhancer factor 2B
5f28_A7e-20172172MEF2C
5f28_B7e-20172172MEF2C
5f28_C7e-20172172MEF2C
5f28_D7e-20172172MEF2C
6c9l_A6e-20172172Myocyte-specific enhancer factor 2B
6c9l_B6e-20172172Myocyte-specific enhancer factor 2B
6c9l_C6e-20172172Myocyte-specific enhancer factor 2B
6c9l_D6e-20172172Myocyte-specific enhancer factor 2B
6c9l_E6e-20172172Myocyte-specific enhancer factor 2B
6c9l_F6e-20172172Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g022730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4470610.0DQ447061.1 Arabidopsis thaliana clone pENTR221-At5g51860 MADS-box protein (At5g51860) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095811.11e-146PREDICTED: MADS-box protein AGL72-like
SwissprotQ9FLH51e-123AGL72_ARATH; MADS-box protein AGL72
TrEMBLR0GNE91e-127R0GNE9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010482530.11e-146(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.21e-110MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]