PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g023250.3
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 108aa    MW: 12638.1 Da    PI: 11.2128
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g023250.3genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK802.4e-251161252
          RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                    +k+++l+d+++ F+lpi+ AAk++++c+TvLK+iCR+  ++RWPhRkiksl
  Csa18g023250.3 11 TKRLTLKDINMLFHLPIETAAKQMNLCPTVLKKICRKGSLMRWPHRKIKSL 61
                    799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.54181IPR003035RWP-RK domain
PfamPF020427.8E-221461IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MYRGQEQRER TKRLTLKDIN MLFHLPIETA AKQMNLCPTV LKKICRKGSL MRWPHRKIKS  60
LHTKITSLKS LVHTAKNDKV KARTEAEIER LQRRIDKICS DALKNMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g023250.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485077.12e-63PREDICTED: uncharacterized protein LOC104763398
RefseqXP_019087630.19e-64PREDICTED: uncharacterized protein LOC104728818
TrEMBLA0A1R7T3I32e-42A0A1R7T3I3_ARATH; RWP-RK domain protein
STRINGXP_010446048.13e-63(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.13e-13RWP-RK domain-containing protein