PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g024010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 231aa MW: 26621.4 Da PI: 7.93

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g024010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.3	2.3e-26	119	169	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++++++++F+ pi +AAkeL+v+lTvLK++CR++GI RWPhRk+ksl Csa18g024010.1 119 QDKLEMSEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSL 169 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.962	105	190	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-21	122	169	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MDPNSLSLLN SPKIENDYDP DSLYDMLPPL ESLLDIEDLK PTRGLHFQFQ YESFEDLFES 60 IDVTNIIPSD DIDMPAQEPY ISSGSSSSSP LAVQKYCPSS NVRSEKRTVK KRNSKKKRQD 120 KLEMSEIKQF FDRPIMKAAK ELNVGLTVLK KRCRELGIYR WPHRKLKSLN SLIKNLKSVG 180 MEEEVKNLEE HRVLIEQEPD AELSDGTKKL RQACFKANYK RRKSLADDYC *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g024010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010485094.1	1e-160	PREDICTED: protein RKD4-like
Swissprot	Q9LVU8	1e-115	RKD4_ARATH; Protein RKD4
TrEMBL	R0GE40	1e-126	R0GE40_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010485094.1	1e-159	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-101	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]