PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g024910.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRF

Protein Properties

Length: 365aa MW: 40120.2 Da PI: 8.1344

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g024910.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75	8.2e-24	105	148	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRC ++v++++k+CErHlhrgr rsrk++e+ Csa18g024910.1 105 LEPGRCRRTDGKKWRCAKEVVSNHKYCERHLHRGRPRSRKHVEP 148 69***************************************997 PP
2	QLQ	51.1	4.2e-18	56	87	2	33
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FT+aQl +L++Q+++yKy++a+ PvP +Ll+ Csa18g024910.1 56 PFTNAQLKELERQAMIYKYMIASIPVPFDLLV 87 9*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.1E-10	55	91	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.6E-11	56	86	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.186	56	91	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.438	104	148	IPR014977	WRC domain
Pfam	PF08879	3.9E-19	106	147	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MDFLKVSDKT TVPCRSDSMF GLNQQQYMEI HPHPHPHHAI TPYSGNGVLG CYYYYPFTNA 60 QLKELERQAM IYKYMIASIP VPFDLLVSSS SSASPCINKN IVGDLEPGRC RRTDGKKWRC 120 AKEVVSNHKY CERHLHRGRP RSRKHVEPPY SRPNNNGGSV KNRDLKTLPQ KLSSSSVKDK 180 ILEPVEVSSS LSNYIESRGS EMFRVSATTE QENKYLNFID VWSDGVRSSE KQSTTTSTPT 240 PVASSNGNLS LYSLDLSMGG NNLMGQDEMG LIQMGLGVIG SGREDHHGYG PYGVSASLEE 300 MSSWLAPMST TPGGPLAEIL RPSPHLAISG DIESYSLTAT PSSSPSRVVK KMMTSSVSDE 360 SSQI*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MDFLKVSDKT TVPCRSDSMF GLNQQQYMEI HPHPHPHHAI TPYSGNGVLG CYYYYPFTNA  60
QLKELERQAM IYKYMIASIP VPFDLLVSSS SSASPCINKN IVGDLEPGRC RRTDGKKWRC  120
AKEVVSNHKY CERHLHRGRP RSRKHVEPPY SRPNNNGGSV KNRDLKTLPQ KLSSSSVKDK  180
ILEPVEVSSS LSNYIESRGS EMFRVSATTE QENKYLNFID VWSDGVRSSE KQSTTTSTPT  240
PVASSNGNLS LYSLDLSMGG NNLMGQDEMG LIQMGLGVIG SGREDHHGYG PYGVSASLEE  300
MSSWLAPMST TPGGPLAEIL RPSPHLAISG DIESYSLTAT PSSSPSRVVK KMMTSSVSDE  360
SSQI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g024910.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176109	0.0	AK176109.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-89-N21.
GenBank	BT010882	0.0	BT010882.1 Arabidopsis thaliana At5g53660 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010482774.1	0.0	PREDICTED: growth-regulating factor 7-like
Swissprot	Q9FJB8	0.0	GRF7_ARATH; Growth-regulating factor 7
TrEMBL	R0GAD3	0.0	R0GAD3_9BRAS; Uncharacterized protein
STRING	XP_010482774.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12106	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	0.0	growth-regulating factor 7

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]