PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g025310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 352aa    MW: 39585.5 Da    PI: 6.9618
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g025310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.41.3e-34771692103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++ei++d+ ++ ++sw+ + +sf+++d+ ef++++LpkyFkh+nf+SFvRQLn+YgFkkv++++         weF+++ F+ gkk+ll++
  Csa18g025310.1  77 FLRKTFEIVDDKVTDPVVSWNPTRKSFIIWDSYEFSENLLPKYFKHKNFSSFVRQLNTYGFKKVDSDR---------WEFANEGFQGGKKHLLKN 162
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr++s+
  Csa18g025310.1 163 IKRRRSK 169
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.9E-5173166IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-3175166IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-3575166IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.8E-3077166IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1777100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-17115127IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340116140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-17128140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MTAIPNVGDI ESSASLGQEA AMETVTVKGG HTGSGGGSSD DDVVSPTKEE ADAVNLTDSS  60
SSVSFSKLHE IGLTTPFLRK TFEIVDDKVT DPVVSWNPTR KSFIIWDSYE FSENLLPKYF  120
KHKNFSSFVR QLNTYGFKKV DSDRWEFANE GFQGGKKHLL KNIKRRRSKS NCNKEASTTG  180
LKKTETEAAS LKEDQNCPIR LEVLKLKQQQ EESQDQMVTV QEKIHGVETE QRHMLSFFAK  240
LAKDQRFVER LVRKRKMKQQ RDLEATEFVK KLKLLHDQET QNNLVDVESQ LIIREFMAMA  300
AKTQPDHESD ISMNNNQSGS TRCQLNTEDL LVDVGSMGGK KIDVDVNGRI G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-217716629129Heat shock factor protein 1
5d5v_B9e-217716629129Heat shock factor protein 1
5d5v_D9e-217716629129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtSeed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g025310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482813.10.0PREDICTED: heat stress transcription factor A-9-like
SwissprotQ9LVW21e-166HSFA9_ARATH; Heat stress transcription factor A-9
TrEMBLR0F1R40.0R0F1R4_9BRAS; Uncharacterized protein
STRINGXP_010482813.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.11e-163heat shock transcription factor A9