PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g025510.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 277aa MW: 31187.4 Da PI: 6.7517

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g025510.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.8e-17	22	66	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++ +E+e +++++++lG++ W++Ia +++ gRt++++k++w+++ Csa18g025510.1 22 RGEFSLQEEETIIQLHRLLGNK-WSAIAIHLP-GRTDNEIKNYWNTH 66 899*****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	7.318	1	16	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-10	2	29	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-20	3	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.84	17	71	IPR017930	Myb domain
SMART	SM00717	4.7E-16	21	69	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-15	22	66	IPR001005	SANT/Myb domain
CDD	cd00167	2.68E-12	24	67	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-21	30	68	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
LRRCGKSCRL RWTNYLRPDI KRGEFSLQEE ETIIQLHRLL GNKWSAIAIH LPGRTDNEIK 60 NYWNTHIKKK LLRMGIDPVT HCPRINLHQL SSFLTSSLFK SISQPMSTPF DLTTSNINPN 120 ILNHLTSSLN NVQTESYQHH QPNQQLQNDL NTDQTTFIGL LNSTAPVQWQ NNGEYLGDYL 180 SYTGSGDPSS NQVPQLGNHS AAAFVSDQIN DGETFKDGWN FSSSMLLGTS SSSSTPLNSS 240 STFHVNGGSE DDRESYGSDM LMFHQHHDHN NNALNLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-19	3	71	40	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:19517001, ECO:0000305\|PubMed:12857823}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g025510.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:12857823, ECO:0000269\|PubMed:19517001, ECO:0000269\|PubMed:8980549}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF175991	0.0	AF175991.1 Arabidopsis thaliana putative transcription factor (MYB49) mRNA, complete cds.
GenBank	AY059820	0.0	AY059820.1 Arabidopsis thaliana Myb-related transcription factor-like protein (At5g54230; MDK4.5) mRNA, complete cds.
GenBank	AY081512	0.0	AY081512.1 Arabidopsis thaliana Myb-related transcription factor-like protein (At5g54230) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010482830.1	0.0	PREDICTED: myb-related protein 308-like
Swissprot	Q9LDR8	2e-57	MY102_ARATH; Transcription factor MYB102
TrEMBL	D7MU68	1e-171	D7MU68_ARALL; Uncharacterized protein
STRING	XP_010482830.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14465	17	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54230.1	1e-137	myb domain protein 49

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615] Zhu L,Guo J,Ma Z,Wang J,Zhou C Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis. Biomolecules, 2019. [PMID:29880735]