PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g027090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 568aa    MW: 63139.7 Da    PI: 7.0882
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g027090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.5e-31206263260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers  d+ ++ei+Y+g+H+h+k
  Csa18g027090.1 206 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSY-DGLITEIIYKGTHDHPK 263
                     8****************************************.***************85 PP
2WRKY106.31.6e-33377435159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Csa18g027090.1 377 LDDGYRWRKYGQKVVRGNPNPRSYYKCTATGCPVRKHVERASHDPKAVITTYEGKHNHD 435
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.871200264IPR003657WRKY domain
SuperFamilySSF1182901.06E-24203264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-26204264IPR003657WRKY domain
SMARTSM007746.7E-33205263IPR003657WRKY domain
PfamPF031061.5E-23206262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37362437IPR003657WRKY domain
SuperFamilySSF1182902.35E-29369437IPR003657WRKY domain
PROSITE profilePS5081138.664372437IPR003657WRKY domain
SMARTSM007748.6E-39377436IPR003657WRKY domain
PfamPF031065.2E-26378435IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MDPDDVSNNR KEFRRDCAGG CARYKLMSPA KLPISRSSCI TIPPGLSPTW FLESPVLLSN  60
IKAEPSPTTG SLFKPQAVHA SSSPYRGSTI HQNIFQEQHS TDFEFRPPPA SNMFWPVVCL  120
KISFIDFKFC AELDKRTSES PLQFQSHSLK HSPSSLTEVA ASSTEISRPH QTTPSVSDIP  180
ERSDPDESAQ TSQNDSKSSA PFILADDGYN WRKYGQKHVK GSEFPRSYYK CTHPNCEVKK  240
LFERSYDGLI TEIIYKGTHD HPKPQPSRRN SGGLVMPAQE ERLDKHSSLD GRDEKGSSFY  300
NLPPPLEQNG NPDVSPVSAN DDGGDVAMSD KNNDDMDDND PFSKRRRLDG AMEITPLVKP  360
IREPRVVVQT LSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTATGCPV RKHVERASHD  420
PKAVITTYEG KHNHDVPTAR STNNNHDMSV PTFRPEETTD TISLNLGVGI ASGGPDHPSN  480
EHPHPHQQQQ QQHIRSEFIH QTQTNGTAGF RFVHGPPMGS YYGNSLNAGI NHQYNGSRET  540
THEAQTGDIS SSSYPSPHNI GRIQSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36204437877Probable WRKY transcription factor 4
2lex_A3e-36204437877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343347KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g027090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483009.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLR0GDB80.0R0GDB8_9BRAS; Uncharacterized protein
STRINGXP_010483009.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein