PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g028960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 701aa    MW: 75886.6 Da    PI: 6.2392
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g028960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31274331260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK vkgse+prsYY+Ct ++C+vkkkvers+ +++++ei+Y+g Hnh+k
  Csa18g028960.1 274 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSR-EGHITEIIYKGAHNHSK 331
                     8****************************************.***************85 PP
2WRKY103.89.4e-33495553159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  Csa18g028960.1 495 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 553
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-28269332IPR003657WRKY domain
SuperFamilySSF1182905.1E-25271332IPR003657WRKY domain
SMARTSM007741.6E-34273331IPR003657WRKY domain
PROSITE profilePS5081123.25274332IPR003657WRKY domain
PfamPF031066.0E-24274329IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-36480555IPR003657WRKY domain
SuperFamilySSF1182901.7E-28487555IPR003657WRKY domain
PROSITE profilePS5081138.136490555IPR003657WRKY domain
SMARTSM007741.8E-37495554IPR003657WRKY domain
PfamPF031069.1E-25496553IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MAGFDENVAV MGEWVPRSPS PRTLFSSVIG EGNSSKPVLE RELSLNHGQV MVVEEDTTTG  60
NYNNDSSLTN VSRGGLCERI AARAGFNAPR LNTESIRSNT NFSIDSGRRS PCLTISSPGL  120
SPATLLESPV FLTNPMAQPS PTTGKFPFLP GFSSNALSSD NAKDEFFDDI GASFTFQSVS  180
RSSSSFFQGT TEMMSVDYGN YINRSSHQPA EEDVKPGSLN IESSNLYGIQ TDPSNQNKAS  240
DATTNTGLDT VDHQEEEEDQ RRGGDSMVGG APAEDGYNWR KYGQKLVKGS EYPRSYYKCT  300
NPNCQVKKKV ERSREGHITE IIYKGAHNHS KPLPNRRSGM QTDGTEQVEQ QQHQQQQQQQ  360
QRDSTPTWVS CNNTQQQGGS NVKNVEEGTT GFEYGNQSGS IQAQTGGQYE SGDAVVVVDT  420
SSTFSNDEDE DDRGTHGSVS LGCDGGGGRG GEGEGEESES KRRKLEAYAA EMSGATRAIR  480
EPRVVVQTTS DVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTAPGCTVRK HVERASHDLK  540
SVITTYEGKH NHDVPAARNS SHGGGGTSNG SSGNSAAQSH HYHNGHHHSE QPRGRFERQV  600
TATNQSPYGR GPFSFQPHLG PPSGYAFGLG QTGLANLSIP GLAFGQGKMP GLPHPYMTQP  660
SVGNMSEAMM QRGGMEPKAE PVSDSGQSVY NQIMSRLPQI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37274556878Probable WRKY transcription factor 4
2lex_A5e-37274556878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g028960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4183080.0AF418308.1 Arabidopsis thaliana WRKY transcription factor 2 (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483100.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLR0EV690.0R0EV69_9BRAS; Uncharacterized protein
STRINGXP_010483100.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]